(33 nodes) Positive regulation of cell cycle network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0RI51	Uncharacterized protein. (38 aa)
	A0A0E0RI50	DUF1618 domain-containing protein. (450 aa)
	A0A0E0RKA6	ANAPC5 domain-containing protein. (947 aa)
	A0A0E0RI40	Uncharacterized protein. (233 aa)
	A0A0E0RHD4	Uncharacterized protein; Belongs to the cyclin family. (562 aa)
	A0A0E0RE30	E2F_TDP domain-containing protein. (446 aa)
	A0A0E0R8A6	MAT1 domain-containing protein. (195 aa)
	A0A0E0R4G1	Uncharacterized protein; Belongs to the cyclin family. (627 aa)
	A0A0E0QNU5	WD_REPEATS_REGION domain-containing protein. (991 aa)
	A0A0E0MYF0	Uncharacterized protein. (222 aa)
	A0A0E0N008	Uncharacterized protein. (245 aa)
	A0A0E0N989	Uncharacterized protein. (789 aa)
	A0A0E0N9D7	Uncharacterized protein; Belongs to the cyclin family. (482 aa)
	A0A0E0NCF6	Uncharacterized protein. (656 aa)
	A0A0E0NE87	Uncharacterized protein; Belongs to the cyclin family. (630 aa)
	A0A0E0NG17	E2F_TDP domain-containing protein. (481 aa)
	A0A0E0NIP2	TPR_REGION domain-containing protein. (621 aa)
	A0A0E0NR04	PCI domain-containing protein. (394 aa)
	A0A0E0NS51	TPR_REGION domain-containing protein. (758 aa)
	A0A0E0NTY4	Uncharacterized protein. (101 aa)
	A0A0E0NYQ0	WD_REPEATS_REGION domain-containing protein. (428 aa)
	A0A0E0P2M7	Uncharacterized protein; Belongs to the argonaute family. (968 aa)
	A0A0E0P900	E2F_TDP domain-containing protein. (408 aa)
	A0A0E0PHK0	Uncharacterized protein. (586 aa)
	A0A0E0RI53	Uncharacterized protein. (264 aa)
	A0A0E0QDP5	PCI domain-containing protein. (420 aa)
	A0A0E0Q949	Uncharacterized protein. (313 aa)
	A0A0E0Q747	RING-type domain-containing protein. (127 aa)
	A0A0E0Q1N2	TPR_REGION domain-containing protein. (201 aa)
	A0A0E0Q0A1	Uncharacterized protein. (721 aa)
	A0A0E0PU39	MAT1 domain-containing protein. (195 aa)
	A0A0E0PRY0	Uncharacterized protein. (276 aa)
	A0A0E0PR91	SP-RING-type domain-containing protein. (225 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0N9D7	A0A0E0PU39	Uncharacterized protein; Belongs to the cyclin family.	MAT1 domain-containing protein.	0.616
A0A0E0N9D7	A0A0E0R8A6	Uncharacterized protein; Belongs to the cyclin family.	MAT1 domain-containing protein.	0.616
A0A0E0NE87	A0A0E0PU39	Uncharacterized protein; Belongs to the cyclin family.	MAT1 domain-containing protein.	0.616
A0A0E0NE87	A0A0E0R8A6	Uncharacterized protein; Belongs to the cyclin family.	MAT1 domain-containing protein.	0.616
A0A0E0NG17	A0A0E0NYQ0	E2F_TDP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.617
A0A0E0NIP2	A0A0E0NS51	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.970
A0A0E0NIP2	A0A0E0NTY4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.945
A0A0E0NIP2	A0A0E0PHK0	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.956
A0A0E0NIP2	A0A0E0Q0A1	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.894
A0A0E0NIP2	A0A0E0Q747	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.945
A0A0E0NIP2	A0A0E0RKA6	TPR_REGION domain-containing protein.	ANAPC5 domain-containing protein.	0.978
A0A0E0NR04	A0A0E0NYQ0	PCI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.631
A0A0E0NR04	A0A0E0PU39	PCI domain-containing protein.	MAT1 domain-containing protein.	0.718
A0A0E0NR04	A0A0E0QDP5	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0A0E0NR04	A0A0E0R8A6	PCI domain-containing protein.	MAT1 domain-containing protein.	0.718
A0A0E0NS51	A0A0E0NIP2	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.970
A0A0E0NS51	A0A0E0NTY4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.992
A0A0E0NS51	A0A0E0PHK0	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.997
A0A0E0NS51	A0A0E0Q0A1	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.990
A0A0E0NS51	A0A0E0Q1N2	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.970