(20 nodes) Exosome (RNase complex) network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NG96	Uncharacterized protein. (451 aa)
	A0A0E0N642	KH_dom_type_1 domain-containing protein. (249 aa)
	A0A0E0N4S9	RNB domain-containing protein. (801 aa)
	A0A0E0P428	RNase_PH domain-containing protein. (238 aa)
	A0A0E0R7F5	Uncharacterized protein. (306 aa)
	A0A0E0RG97	Uncharacterized protein. (284 aa)
	A0A0E0R4W9	Uncharacterized protein. (1003 aa)
	A0A0E0QZI9	HRDC domain-containing protein. (902 aa)
	A0A0E0QNK2	Uncharacterized protein. (234 aa)
	A0A0E0QDM2	Uncharacterized protein. (262 aa)
	A0A0E0PBN2	S1 domain-containing protein. (335 aa)
	A0A0E0NRN0	Uncharacterized protein. (99 aa)
	A0A0E0NRM9	Uncharacterized protein. (305 aa)
	A0A0E0NRI1	Uncharacterized protein. (2032 aa)
	A0A0E0NQM0	Rho_N domain-containing protein. (375 aa)
	A0A0E0NPW8	HRDC domain-containing protein. (523 aa)
	A0A0E0NP70	Uncharacterized protein; Belongs to the RNR ribonuclease family. (900 aa)
	A0A0E0NMS6	EXOSC1 domain-containing protein. (196 aa)
	A0A0E0NMM3	Uncharacterized protein. (100 aa)
	A0A0E0P3T1	Uncharacterized protein. (260 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0N4S9	A0A0E0N642	RNB domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.976
A0A0E0N4S9	A0A0E0NG96	RNB domain-containing protein.	Uncharacterized protein.	0.979
A0A0E0N4S9	A0A0E0NMS6	RNB domain-containing protein.	EXOSC1 domain-containing protein.	0.979
A0A0E0N4S9	A0A0E0NPW8	RNB domain-containing protein.	HRDC domain-containing protein.	0.946
A0A0E0N4S9	A0A0E0P3T1	RNB domain-containing protein.	Uncharacterized protein.	0.943
A0A0E0N4S9	A0A0E0P428	RNB domain-containing protein.	RNase_PH domain-containing protein.	0.977
A0A0E0N4S9	A0A0E0PBN2	RNB domain-containing protein.	S1 domain-containing protein.	0.975
A0A0E0N4S9	A0A0E0QDM2	RNB domain-containing protein.	Uncharacterized protein.	0.943
A0A0E0N4S9	A0A0E0QNK2	RNB domain-containing protein.	Uncharacterized protein.	0.956
A0A0E0N4S9	A0A0E0QZI9	RNB domain-containing protein.	HRDC domain-containing protein.	0.946
A0A0E0N4S9	A0A0E0R4W9	RNB domain-containing protein.	Uncharacterized protein.	0.939
A0A0E0N4S9	A0A0E0R7F5	RNB domain-containing protein.	Uncharacterized protein.	0.978
A0A0E0N4S9	A0A0E0RG97	RNB domain-containing protein.	Uncharacterized protein.	0.979
A0A0E0N642	A0A0E0N4S9	KH_dom_type_1 domain-containing protein.	RNB domain-containing protein.	0.976
A0A0E0N642	A0A0E0NG96	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.999
A0A0E0N642	A0A0E0NMS6	KH_dom_type_1 domain-containing protein.	EXOSC1 domain-containing protein.	0.999
A0A0E0N642	A0A0E0NP70	KH_dom_type_1 domain-containing protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.988
A0A0E0N642	A0A0E0NPW8	KH_dom_type_1 domain-containing protein.	HRDC domain-containing protein.	0.983
A0A0E0N642	A0A0E0P3T1	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.988
A0A0E0N642	A0A0E0P428	KH_dom_type_1 domain-containing protein.	RNase_PH domain-containing protein.	0.999