(5 nodes) RNA-binding domain, S1, IF1 type network (Oryza rufipogon)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	infA	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (107 aa)
	A0A0E0RF35	S1-like domain-containing protein. (67 aa)
	A0A0E0PXH4	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (144 aa)
	A0A0E0NNR0	S1-like domain-containing protein. (167 aa)
	A0A0E0NDG2	S1-like domain-containing protein. (139 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0NDG2	A0A0E0NNR0	A0A0E0NDG2	A0A0E0NNR0	S1-like domain-containing protein.	S1-like domain-containing protein.	0.421
A0A0E0NDG2	A0A0E0PXH4	A0A0E0NDG2	A0A0E0PXH4	S1-like domain-containing protein.	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.874
A0A0E0NDG2	A0A0E0RF35	A0A0E0NDG2	A0A0E0RF35	S1-like domain-containing protein.	S1-like domain-containing protein.	0.867
A0A0E0NDG2	infA	A0A0E0NDG2	H6CSN2	S1-like domain-containing protein.	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.867
A0A0E0NNR0	A0A0E0NDG2	A0A0E0NNR0	A0A0E0NDG2	S1-like domain-containing protein.	S1-like domain-containing protein.	0.421
A0A0E0NNR0	A0A0E0PXH4	A0A0E0NNR0	A0A0E0PXH4	S1-like domain-containing protein.	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.421
A0A0E0PXH4	A0A0E0NDG2	A0A0E0PXH4	A0A0E0NDG2	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	S1-like domain-containing protein.	0.874
A0A0E0PXH4	A0A0E0NNR0	A0A0E0PXH4	A0A0E0NNR0	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	S1-like domain-containing protein.	0.421
A0A0E0PXH4	A0A0E0RF35	A0A0E0PXH4	A0A0E0RF35	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	S1-like domain-containing protein.	0.867
A0A0E0PXH4	infA	A0A0E0PXH4	H6CSN2	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.867
A0A0E0RF35	A0A0E0NDG2	A0A0E0RF35	A0A0E0NDG2	S1-like domain-containing protein.	S1-like domain-containing protein.	0.867
A0A0E0RF35	A0A0E0PXH4	A0A0E0RF35	A0A0E0PXH4	S1-like domain-containing protein.	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.867
infA	A0A0E0NDG2	H6CSN2	A0A0E0NDG2	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	S1-like domain-containing protein.	0.867
infA	A0A0E0PXH4	H6CSN2	A0A0E0PXH4	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.867