52 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0PBK5	NAC domain-containing protein. (278 aa)
	A0A0E0PCU4	AAA domain-containing protein. (344 aa)
	A0A0E0NNK7	NAC domain-containing protein. (297 aa)
	A0A0E0NML9	NAC domain-containing protein. (331 aa)
	A0A0E0NMF4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	A0A0E0NLM8	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (656 aa)
	A0A0E0NLL5	AAA domain-containing protein. (346 aa)
	A0A0E0NJU4	Uncharacterized protein. (729 aa)
	A0A0E0NHY8	NAC domain-containing protein. (283 aa)
	A0A0E0NFE0	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2143 aa)
	A0A0E0NEX1	Uncharacterized protein. (306 aa)
	A0A0E0N218	DNA_pol3_gamma3 domain-containing protein. (1022 aa)
	A0A0E0MYK2	CPSF_A domain-containing protein. (175 aa)
	A0A0E0MYG7	Uncharacterized protein. (178 aa)
	A0A0E0R0E1	NAC domain-containing protein. (324 aa)
	A0A0E0R5K4	DUF223 domain-containing protein. (362 aa)
	A0A0E0R342	Uncharacterized protein. (436 aa)
	A0A0E0MVN0	Ubiquitin-like domain-containing protein. (155 aa)
	A0A0E0MR78	Uncharacterized protein. (214 aa)
	A0A0E0R2U2	Uncharacterized protein. (451 aa)
	A0A0E0RHQ7	Uncharacterized protein. (321 aa)
	A0A0E0RG45	AAA domain-containing protein. (963 aa)
	A0A0E0RF42	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	A0A0E0RE78	WD_REPEATS_REGION domain-containing protein. (744 aa)
	A0A0E0RC83	Rep_fac-A_C domain-containing protein. (296 aa)
	A0A0E0RBX0	Uncharacterized protein. (101 aa)
	A0A0E0RB58	Uncharacterized protein. (197 aa)
	A0A0E0RAG3	Rep_fac-A_C domain-containing protein. (458 aa)
	A0A0E0R9X8	Replication factor C subunit 1. (987 aa)
	A0A0E0R6A8	DNA_pol3_gamma3 domain-containing protein. (1183 aa)
	A0A0E0PGK4	Uncharacterized protein. (193 aa)
	A0A0E0PHV9	Ubiquitin-like domain-containing protein. (155 aa)
	A0A0E0PP39	Uncharacterized protein. (636 aa)
	A0A0E0PQ99	DNA_pol3_gamma3 domain-containing protein. (1083 aa)
	A0A0E0PS31	CPSF_A domain-containing protein. (1090 aa)
	A0A0E0PSB2	NAC domain-containing protein. (683 aa)
	A0A0E0QBV2	Uncharacterized protein. (598 aa)
	A0A0E0QDQ7	AAA domain-containing protein. (733 aa)
	A0A0E0QEK5	NAC domain-containing protein. (729 aa)
	A0A0E0QEQ4	Uncharacterized protein. (151 aa)
	A0A0E0QLD5	Uncharacterized protein. (353 aa)
	A0A0E0QLY3	Uncharacterized protein. (134 aa)
	A0A0E0QTY0	Uncharacterized protein. (131 aa)
	A0A0E0QVA0	CBFD_NFYB_HMF domain-containing protein. (167 aa)
	A0A0E0QZ31	NAC domain-containing protein. (543 aa)
	A0A0E0NPJ6	Uncharacterized protein. (1010 aa)
	A0A0E0NRJ4	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
	A0A0E0NSS6	AAA domain-containing protein. (1233 aa)
	A0A0E0P000	WD_REPEATS_REGION domain-containing protein. (555 aa)
	A0A0E0P288	CULLIN_2 domain-containing protein; Belongs to the cullin family. (836 aa)
	A0A0E0P2E5	AAA domain-containing protein. (353 aa)
	A0A0E0P437	Uncharacterized protein. (547 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MR78	A0A0E0MVN0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.474
A0A0E0MR78	A0A0E0MYK2	Uncharacterized protein.	CPSF_A domain-containing protein.	0.458
A0A0E0MR78	A0A0E0N218	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.562
A0A0E0MR78	A0A0E0NFE0	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.693
A0A0E0MR78	A0A0E0NJU4	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A0E0MR78	A0A0E0NLL5	Uncharacterized protein.	AAA domain-containing protein.	0.675
A0A0E0MR78	A0A0E0NMF4	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.788
A0A0E0MR78	A0A0E0NSS6	Uncharacterized protein.	AAA domain-containing protein.	0.706
A0A0E0MR78	A0A0E0P2E5	Uncharacterized protein.	AAA domain-containing protein.	0.644
A0A0E0MR78	A0A0E0PCU4	Uncharacterized protein.	AAA domain-containing protein.	0.690
A0A0E0MR78	A0A0E0PHV9	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.474
A0A0E0MR78	A0A0E0PQ99	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.562
A0A0E0MR78	A0A0E0PS31	Uncharacterized protein.	CPSF_A domain-containing protein.	0.458
A0A0E0MR78	A0A0E0QDQ7	Uncharacterized protein.	AAA domain-containing protein.	0.562
A0A0E0MR78	A0A0E0QVA0	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.535
A0A0E0MR78	A0A0E0R2U2	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A0E0MR78	A0A0E0R6A8	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.562
A0A0E0MR78	A0A0E0R9X8	Uncharacterized protein.	Replication factor C subunit 1.	0.706
A0A0E0MR78	A0A0E0RF42	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.562
A0A0E0MR78	A0A0E0RG45	Uncharacterized protein.	AAA domain-containing protein.	0.562