(30 nodes) HS-GAG degradation network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0N765	DUF1624 domain-containing protein. (488 aa)
	A0A0E0N7P6	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. (1084 aa)
	A0A0E0NBT1	Beta-galactosidase. (729 aa)
	A0A0E0NFQ7	DUF1624 domain-containing protein. (436 aa)
	A0A0E0NMB8	Uncharacterized protein. (686 aa)
	A0A0E0NQ49	SUEL-type lectin domain-containing protein. (835 aa)
	A0A0E0NRF3	Uncharacterized protein. (542 aa)
	A0A0E0NSM2	Beta-galactosidase. (952 aa)
	A0A0E0NV93	Uncharacterized protein. (791 aa)
	A0A0E0NXW5	Usp domain-containing protein. (292 aa)
	A0A0E0P8P5	DUF1624 domain-containing protein. (435 aa)
	A0A0E0PEY9	Uncharacterized protein. (796 aa)
	A0A0E0PHR8	DUF1624 domain-containing protein. (461 aa)
	A0A0E0PMT8	Beta-galactosidase. (792 aa)
	A0A0E0PMU0	Glyco_hydro_35 domain-containing protein. (74 aa)
	A0A0E0PPI9	Myb_DNA-bind_3 domain-containing protein. (204 aa)
	A0A0E0PQI9	Uncharacterized protein; Belongs to the glycosyl hydrolase 35 family. (671 aa)
	A0A0E0PU79	Uncharacterized protein. (541 aa)
	A0A0E0PZE9	Beta-galactosidase. (716 aa)
	A0A0E0QAT4	Uncharacterized protein. (515 aa)
	A0A0E0QM35	Beta-galactosidase. (882 aa)
	A0A0E0QUG5	Beta-galactosidase. (838 aa)
	A0A0E0QXU2	Beta-galactosidase. (829 aa)
	A0A0E0R6C2	DUF1624 domain-containing protein. (447 aa)
	A0A0E0R9G0	DUF1624 domain-containing protein. (391 aa)
	A0A0E0RGN4	Beta-galactosidase. (899 aa)
	A0A0E0RJ57	Uncharacterized protein. (566 aa)
	A0A0E0MXU8	Uncharacterized protein. (210 aa)
	A0A0E0MYG5	Beta-galactosidase. (822 aa)
	A0A0E0N5Q2	SUEL-type lectin domain-containing protein. (851 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MXU8	A0A0E0N7P6	Uncharacterized protein.	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	0.691
A0A0E0MYG5	A0A0E0N7P6	Beta-galactosidase.	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	0.899
A0A0E0MYG5	A0A0E0PQI9	Beta-galactosidase.	Uncharacterized protein; Belongs to the glycosyl hydrolase 35 family.	0.878
A0A0E0N5Q2	A0A0E0N7P6	SUEL-type lectin domain-containing protein.	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	0.691
A0A0E0N765	A0A0E0NFQ7	DUF1624 domain-containing protein.	DUF1624 domain-containing protein.	0.704
A0A0E0N765	A0A0E0NV93	DUF1624 domain-containing protein.	Uncharacterized protein.	0.948
A0A0E0N765	A0A0E0P8P5	DUF1624 domain-containing protein.	DUF1624 domain-containing protein.	0.729
A0A0E0N765	A0A0E0PEY9	DUF1624 domain-containing protein.	Uncharacterized protein.	0.948
A0A0E0N765	A0A0E0PHR8	DUF1624 domain-containing protein.	DUF1624 domain-containing protein.	0.871
A0A0E0N765	A0A0E0R6C2	DUF1624 domain-containing protein.	DUF1624 domain-containing protein.	0.875
A0A0E0N765	A0A0E0R9G0	DUF1624 domain-containing protein.	DUF1624 domain-containing protein.	0.731
A0A0E0N7P6	A0A0E0MXU8	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Uncharacterized protein.	0.691
A0A0E0N7P6	A0A0E0MYG5	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Beta-galactosidase.	0.899
A0A0E0N7P6	A0A0E0N5Q2	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	SUEL-type lectin domain-containing protein.	0.691
A0A0E0N7P6	A0A0E0NBT1	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Beta-galactosidase.	0.899
A0A0E0N7P6	A0A0E0NQ49	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	SUEL-type lectin domain-containing protein.	0.691
A0A0E0N7P6	A0A0E0NSM2	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Beta-galactosidase.	0.903
A0A0E0N7P6	A0A0E0NXW5	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Usp domain-containing protein.	0.691
A0A0E0N7P6	A0A0E0PMT8	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Beta-galactosidase.	0.691
A0A0E0N7P6	A0A0E0PMU0	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Glyco_hydro_35 domain-containing protein.	0.691