27 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0PRJ6	Histone H2B; Belongs to the histone H2B family. (152 aa)
	A0A0E0PUF9	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (1164 aa)
	A0A0E0QBK7	Uncharacterized protein. (296 aa)
	A0A0E0QFK4	F-box domain-containing protein. (379 aa)
	A0A0E0QKJ6	Histone H2B; Belongs to the histone H2B family. (71 aa)
	A0A0E0QKJ7	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0QSZ2	Histone H2B; Belongs to the histone H2B family. (139 aa)
	A0A0E0QVD1	Histone domain-containing protein; Belongs to the histone H2B family. (194 aa)
	A0A0E0RIX5	Importin N-terminal domain-containing protein. (964 aa)
	A0A0E0QYT6	ORC_WH_C domain-containing protein. (752 aa)
	A0A0E0MRC7	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0MRF3	F-box domain-containing protein. (408 aa)
	A0A0E0MRF4	F-box domain-containing protein. (415 aa)
	A0A0E0MRF5	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0MRF7	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0MRF9	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0MRG0	F-box domain-containing protein. (431 aa)
	A0A0E0MRG9	Histone H2B; Belongs to the histone H2B family. (171 aa)
	A0A0E0MWW8	Histone domain-containing protein; Belongs to the histone H2B family. (105 aa)
	A0A0E0N0U7	Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (381 aa)
	A0A0E0NQP3	Uncharacterized protein. (359 aa)
	A0A0E0NTD1	Histone H2B; Belongs to the histone H2B family. (152 aa)
	A0A0E0NTR4	Importin N-terminal domain-containing protein. (870 aa)
	A0A0E0P1L0	Uncharacterized protein. (524 aa)
	A0A0E0PGU2	Uncharacterized protein. (354 aa)
	A0A0E0PL66	Importin N-terminal domain-containing protein. (868 aa)
	A0A0E0PNJ7	Histone H2B; Belongs to the histone H2B family. (118 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MRC7	A0A0E0PUF9	Histone H2B; Belongs to the histone H2B family.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.743
A0A0E0MRF3	A0A0E0PUF9	F-box domain-containing protein.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.743
A0A0E0MRF4	A0A0E0PUF9	F-box domain-containing protein.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.743
A0A0E0MRF5	A0A0E0PUF9	Histone H2B; Belongs to the histone H2B family.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.743
A0A0E0MRF7	A0A0E0PUF9	Histone H2B; Belongs to the histone H2B family.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.743
A0A0E0MRF9	A0A0E0PUF9	Histone H2B; Belongs to the histone H2B family.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.743
A0A0E0MRG0	A0A0E0PUF9	F-box domain-containing protein.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.743
A0A0E0MRG9	A0A0E0MWW8	Histone H2B; Belongs to the histone H2B family.	Histone domain-containing protein; Belongs to the histone H2B family.	0.539
A0A0E0MRG9	A0A0E0PUF9	Histone H2B; Belongs to the histone H2B family.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.743
A0A0E0MWW8	A0A0E0MRG9	Histone domain-containing protein; Belongs to the histone H2B family.	Histone H2B; Belongs to the histone H2B family.	0.539
A0A0E0MWW8	A0A0E0PUF9	Histone domain-containing protein; Belongs to the histone H2B family.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.743
A0A0E0MWW8	A0A0E0QKJ6	Histone domain-containing protein; Belongs to the histone H2B family.	Histone H2B; Belongs to the histone H2B family.	0.542
A0A0E0N0U7	A0A0E0NQP3	Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family.	Uncharacterized protein.	0.998
A0A0E0N0U7	A0A0E0P1L0	Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family.	Uncharacterized protein.	0.997
A0A0E0N0U7	A0A0E0PUF9	Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.994
A0A0E0N0U7	A0A0E0QBK7	Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family.	Uncharacterized protein.	0.995
A0A0E0N0U7	A0A0E0QYT6	Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family.	ORC_WH_C domain-containing protein.	0.996
A0A0E0N0U7	A0A0E0RIX5	Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family.	Importin N-terminal domain-containing protein.	0.634
A0A0E0NQP3	A0A0E0N0U7	Uncharacterized protein.	Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family.	0.998
A0A0E0NQP3	A0A0E0P1L0	Uncharacterized protein.	Uncharacterized protein.	0.999