40 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NLM8	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (656 aa)
	A0A0E0MR78	Uncharacterized protein. (214 aa)
	A0A0E0N5K1	DNA polymerase. (1506 aa)
	A0A0E0NEX1	Uncharacterized protein. (306 aa)
	A0A0E0NHY8	NAC domain-containing protein. (283 aa)
	A0A0E0NMF4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	A0A0E0NML9	NAC domain-containing protein. (331 aa)
	A0A0E0NNK7	NAC domain-containing protein. (297 aa)
	A0A0E0NP59	Uncharacterized protein. (447 aa)
	A0A0E0NRJ4	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
	A0A0E0P3J8	Uncharacterized protein. (639 aa)
	A0A0E0P437	Uncharacterized protein. (547 aa)
	A0A0E0PBK5	NAC domain-containing protein. (278 aa)
	A0A0E0PDB1	Uncharacterized protein. (1248 aa)
	A0A0E0PG24	Protein kinase domain-containing protein. (278 aa)
	A0A0E0PGK4	Uncharacterized protein. (193 aa)
	A0A0E0PLB1	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (426 aa)
	A0A0E0PP39	Uncharacterized protein. (636 aa)
	A0A0E0PQJ8	XPGI domain-containing protein. (256 aa)
	A0A0E0PSB2	NAC domain-containing protein. (683 aa)
	A0A0E0Q717	Uncharacterized protein. (427 aa)
	A0A0E0QBV2	Uncharacterized protein. (598 aa)
	A0A0E0QD83	Uncharacterized protein. (641 aa)
	A0A0E0QEK5	NAC domain-containing protein. (729 aa)
	A0A0E0QEQ4	Uncharacterized protein. (151 aa)
	A0A0E0QLD5	Uncharacterized protein. (353 aa)
	A0A0E0QLY3	Uncharacterized protein. (134 aa)
	A0A0E0QTY0	Uncharacterized protein. (131 aa)
	A0A0E0QU05	Uncharacterized protein. (629 aa)
	A0A0E0QZ31	NAC domain-containing protein. (543 aa)
	A0A0E0R0E1	NAC domain-containing protein. (324 aa)
	A0A0E0R342	Uncharacterized protein. (436 aa)
	A0A0E0R531	DNA polymerase. (1082 aa)
	A0A0E0R5K4	DUF223 domain-containing protein. (362 aa)
	A0A0E0RAG3	Rep_fac-A_C domain-containing protein. (458 aa)
	A0A0E0RB58	Uncharacterized protein. (197 aa)
	A0A0E0RBX0	Uncharacterized protein. (101 aa)
	A0A0E0RC83	Rep_fac-A_C domain-containing protein. (296 aa)
	A0A0E0RFH5	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (576 aa)
	A0A0E0RHQ7	Uncharacterized protein. (321 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MR78	A0A0E0N5K1	Uncharacterized protein.	DNA polymerase.	0.726
A0A0E0MR78	A0A0E0NMF4	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.788
A0A0E0MR78	A0A0E0NP59	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A0E0MR78	A0A0E0P3J8	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0E0MR78	A0A0E0PDB1	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0E0MR78	A0A0E0PG24	Uncharacterized protein.	Protein kinase domain-containing protein.	0.683
A0A0E0MR78	A0A0E0PLB1	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.669
A0A0E0MR78	A0A0E0PQJ8	Uncharacterized protein.	XPGI domain-containing protein.	0.535
A0A0E0MR78	A0A0E0Q717	Uncharacterized protein.	Uncharacterized protein.	0.702
A0A0E0MR78	A0A0E0QD83	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0E0MR78	A0A0E0QU05	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0E0MR78	A0A0E0R531	Uncharacterized protein.	DNA polymerase.	0.679
A0A0E0MR78	A0A0E0RFH5	Uncharacterized protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.577
A0A0E0N5K1	A0A0E0MR78	DNA polymerase.	Uncharacterized protein.	0.726
A0A0E0N5K1	A0A0E0NEX1	DNA polymerase.	Uncharacterized protein.	0.726
A0A0E0N5K1	A0A0E0NHY8	DNA polymerase.	NAC domain-containing protein.	0.726
A0A0E0N5K1	A0A0E0NLM8	DNA polymerase.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.726
A0A0E0N5K1	A0A0E0NMF4	DNA polymerase.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.996
A0A0E0N5K1	A0A0E0NML9	DNA polymerase.	NAC domain-containing protein.	0.726
A0A0E0N5K1	A0A0E0NNK7	DNA polymerase.	NAC domain-containing protein.	0.726