(18 nodes) Ubiquitin Mediated Degradation of Phosphorylated Cdc25A network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MVN0	Ubiquitin-like domain-containing protein. (155 aa)
	A0A0E0RA82	Uncharacterized protein. (1198 aa)
	A0A0E0QUF3	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (249 aa)
	A0A0E0QM32	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (319 aa)
	A0A0E0QFT4	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (987 aa)
	A0A0E0Q9M5	PI31_Prot_N domain-containing protein. (292 aa)
	A0A0E0PWR7	Uncharacterized protein. (1842 aa)
	A0A0E0PTP0	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (277 aa)
	A0A0E0PTA0	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (246 aa)
	A0A0E0PR22	Uncharacterized protein. (650 aa)
	A0A0E0PIG5	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (272 aa)
	A0A0E0PHV9	Ubiquitin-like domain-containing protein. (155 aa)
	A0A0E0PDU9	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (964 aa)
	A0A0E0NSH6	Uncharacterized protein. (318 aa)
	A0A0E0NLG5	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (246 aa)
	A0A0E0N9E6	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (270 aa)
	A0A0E0N322	Uncharacterized protein. (196 aa)
	A0A0E0N320	Uncharacterized protein. (541 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MVN0	A0A0E0N320	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.925
A0A0E0MVN0	A0A0E0N322	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.925
A0A0E0MVN0	A0A0E0N9E6	Ubiquitin-like domain-containing protein.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.925
A0A0E0MVN0	A0A0E0NLG5	Ubiquitin-like domain-containing protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.944
A0A0E0MVN0	A0A0E0NSH6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.944
A0A0E0MVN0	A0A0E0PDU9	Ubiquitin-like domain-containing protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.944
A0A0E0MVN0	A0A0E0PHV9	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.931
A0A0E0MVN0	A0A0E0PIG5	Ubiquitin-like domain-containing protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.970
A0A0E0MVN0	A0A0E0PR22	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.973
A0A0E0MVN0	A0A0E0PTA0	Ubiquitin-like domain-containing protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.944
A0A0E0MVN0	A0A0E0PTP0	Ubiquitin-like domain-containing protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.965
A0A0E0MVN0	A0A0E0PWR7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.713
A0A0E0MVN0	A0A0E0Q9M5	Ubiquitin-like domain-containing protein.	PI31_Prot_N domain-containing protein.	0.726
A0A0E0MVN0	A0A0E0QFT4	Ubiquitin-like domain-containing protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.944
A0A0E0MVN0	A0A0E0QM32	Ubiquitin-like domain-containing protein.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.937
A0A0E0MVN0	A0A0E0QUF3	Ubiquitin-like domain-containing protein.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.937
A0A0E0MVN0	A0A0E0RA82	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.645
A0A0E0N320	A0A0E0MVN0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.925
A0A0E0N320	A0A0E0NLG5	Uncharacterized protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.993
A0A0E0N320	A0A0E0NSH6	Uncharacterized protein.	Uncharacterized protein.	0.956