(26 nodes) Lysine catabolism network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0RIF2	DAO domain-containing protein. (385 aa)
	A0A0E0MRM6	Uncharacterized protein. (433 aa)
	A0A0E0MVF4	DAO domain-containing protein. (414 aa)
	A0A0E0MVK0	Uncharacterized protein. (116 aa)
	A0A0E0MVN3	Dihydrolipoyl dehydrogenase. (503 aa)
	A0A0E0MVT4	Dihydrolipoyl dehydrogenase. (561 aa)
	A0A0E0MX80	Stress-response A/B barrel domain-containing protein. (112 aa)
	A0A0E0MX81	Stress-response A/B barrel domain-containing protein. (72 aa)
	A0A0E0MX82	Stress-response A/B barrel domain-containing protein. (113 aa)
	A0A0E0NFF8	Lipoyl-binding domain-containing protein. (536 aa)
	A0A0E0NLU2	Uncharacterized protein. (1169 aa)
	A0A0E0NZ57	Pyr_redox domain-containing protein. (229 aa)
	A0A0E0P8C0	Transket_pyr domain-containing protein. (1016 aa)
	A0A0E0P8F6	Lipoyl-binding domain-containing protein. (440 aa)
	A0A0E0PHS6	Dihydrolipoyl dehydrogenase. (590 aa)
	A0A0E0PHV7	Dihydrolipoyl dehydrogenase. (504 aa)
	A0A0E0PHZ6	Uncharacterized protein. (430 aa)
	A0A0E0PXJ8	Uncharacterized protein. (410 aa)
	A0A0E0PXK5	Uncharacterized protein. (416 aa)
	A0A0E0Q260	Rieske domain-containing protein. (411 aa)
	A0A0E0QD63	Transket_pyr domain-containing protein. (1247 aa)
	A0A0E0QRY6	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (336 aa)
	A0A0E0QTA3	DAO domain-containing protein. (419 aa)
	A0A0E0QYG6	Uncharacterized protein. (431 aa)
	A0A0E0QYG7	Uncharacterized protein. (564 aa)
	A0A0E0R1S3	Uncharacterized protein. (336 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MRM6	A0A0E0MVN3	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.705
A0A0E0MRM6	A0A0E0MVT4	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.705
A0A0E0MRM6	A0A0E0NFF8	Uncharacterized protein.	Lipoyl-binding domain-containing protein.	0.798
A0A0E0MRM6	A0A0E0NZ57	Uncharacterized protein.	Pyr_redox domain-containing protein.	0.705
A0A0E0MRM6	A0A0E0P8C0	Uncharacterized protein.	Transket_pyr domain-containing protein.	0.595
A0A0E0MRM6	A0A0E0P8F6	Uncharacterized protein.	Lipoyl-binding domain-containing protein.	0.798
A0A0E0MRM6	A0A0E0PHS6	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.705
A0A0E0MRM6	A0A0E0PHV7	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.705
A0A0E0MRM6	A0A0E0PHZ6	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A0E0MRM6	A0A0E0QD63	Uncharacterized protein.	Transket_pyr domain-containing protein.	0.595
A0A0E0MRM6	A0A0E0QRY6	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.850
A0A0E0MVF4	A0A0E0MVK0	DAO domain-containing protein.	Uncharacterized protein.	0.632
A0A0E0MVF4	A0A0E0MVN3	DAO domain-containing protein.	Dihydrolipoyl dehydrogenase.	0.703
A0A0E0MVF4	A0A0E0MVT4	DAO domain-containing protein.	Dihydrolipoyl dehydrogenase.	0.703
A0A0E0MVF4	A0A0E0NZ57	DAO domain-containing protein.	Pyr_redox domain-containing protein.	0.703
A0A0E0MVF4	A0A0E0P8C0	DAO domain-containing protein.	Transket_pyr domain-containing protein.	0.555
A0A0E0MVF4	A0A0E0PHS6	DAO domain-containing protein.	Dihydrolipoyl dehydrogenase.	0.703
A0A0E0MVF4	A0A0E0PHV7	DAO domain-containing protein.	Dihydrolipoyl dehydrogenase.	0.703
A0A0E0MVF4	A0A0E0QD63	DAO domain-containing protein.	Transket_pyr domain-containing protein.	0.555
A0A0E0MVF4	A0A0E0QRY6	DAO domain-containing protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.700