85 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0PCU4	AAA domain-containing protein. (344 aa)
	A0A0E0PFL3	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (386 aa)
	A0A0E0MR78	Uncharacterized protein. (214 aa)
	A0A0E0MRC7	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0MRF3	F-box domain-containing protein. (408 aa)
	A0A0E0MRF4	F-box domain-containing protein. (415 aa)
	A0A0E0MRF5	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0MRF7	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0MRF9	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0MRG0	F-box domain-containing protein. (431 aa)
	A0A0E0MRG9	Histone H2B; Belongs to the histone H2B family. (171 aa)
	A0A0E0MW15	Poly [ADP-ribose] polymerase. (563 aa)
	A0A0E0MW16	Poly [ADP-ribose] polymerase. (802 aa)
	A0A0E0MWW8	Histone domain-containing protein; Belongs to the histone H2B family. (105 aa)
	A0A0E0N218	DNA_pol3_gamma3 domain-containing protein. (1022 aa)
	A0A0E0N256	Uncharacterized protein. (431 aa)
	A0A0E0NES7	CMP/dCMP-type deaminase domain-containing protein. (622 aa)
	A0A0E0NEX1	Uncharacterized protein. (306 aa)
	A0A0E0NFE0	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2143 aa)
	A0A0E0NFV0	Poly [ADP-ribose] polymerase. (814 aa)
	A0A0E0NHY8	NAC domain-containing protein. (283 aa)
	A0A0E0NJU4	Uncharacterized protein. (729 aa)
	A0A0E0NLK7	Uncharacterized protein. (280 aa)
	A0A0E0NLL5	AAA domain-containing protein. (346 aa)
	A0A0E0NLM8	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (656 aa)
	A0A0E0NMF4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	A0A0E0NML9	NAC domain-containing protein. (331 aa)
	A0A0E0NNK7	NAC domain-containing protein. (297 aa)
	A0A0E0NNU3	CMP/dCMP-type deaminase domain-containing protein. (423 aa)
	A0A0E0NRJ4	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
	A0A0E0NSS6	AAA domain-containing protein. (1233 aa)
	A0A0E0RHQ7	Uncharacterized protein. (321 aa)
	A0A0E0RG45	AAA domain-containing protein. (963 aa)
	A0A0E0RF60	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (426 aa)
	A0A0E0RF42	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	A0A0E0RC83	Rep_fac-A_C domain-containing protein. (296 aa)
	A0A0E0RBX0	Uncharacterized protein. (101 aa)
	A0A0E0RB58	Uncharacterized protein. (197 aa)
	A0A0E0RAG3	Rep_fac-A_C domain-containing protein. (458 aa)
	A0A0E0R9X8	Replication factor C subunit 1. (987 aa)
	NTH1	Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (373 aa)
	A0A0E0R6A8	DNA_pol3_gamma3 domain-containing protein. (1183 aa)
	A0A0E0R5K4	DUF223 domain-containing protein. (362 aa)
	A0A0E0R342	Uncharacterized protein. (436 aa)
	A0A0E0R2U2	Uncharacterized protein. (451 aa)
	A0A0E0R0P3	DNA ligase. (912 aa)
	A0A0E0R0E1	NAC domain-containing protein. (324 aa)
	A0A0E0QZ31	NAC domain-containing protein. (543 aa)
	A0A0E0QVD1	Histone domain-containing protein; Belongs to the histone H2B family. (194 aa)
	A0A0E0QVA0	CBFD_NFYB_HMF domain-containing protein. (167 aa)
	A0A0E0QU05	Uncharacterized protein. (629 aa)
	A0A0E0QTY0	Uncharacterized protein. (131 aa)
	A0A0E0QSZ2	Histone H2B; Belongs to the histone H2B family. (139 aa)
	A0A0E0QLY3	Uncharacterized protein. (134 aa)
	A0A0E0QLD5	Uncharacterized protein. (353 aa)
	A0A0E0QKJ7	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0QKJ6	Histone H2B; Belongs to the histone H2B family. (71 aa)
	A0A0E0QFK4	F-box domain-containing protein. (379 aa)
	A0A0E0QEQ4	Uncharacterized protein. (151 aa)
	A0A0E0QEK5	NAC domain-containing protein. (729 aa)
	A0A0E0QDQ7	AAA domain-containing protein. (733 aa)
	A0A0E0QD83	Uncharacterized protein. (641 aa)
	A0A0E0QC67	ENDO3c domain-containing protein. (439 aa)
	A0A0E0QBV2	Uncharacterized protein. (598 aa)
	A0A0E0Q753	Poly [ADP-ribose] polymerase. (940 aa)
	A0A0E0Q654	CMP/dCMP-type deaminase domain-containing protein. (219 aa)
	A0A0E0PY42	CMP/dCMP-type deaminase domain-containing protein. (1591 aa)
	A0A0E0PTF1	BRCT domain-containing protein. (336 aa)
	A0A0E0PSB2	NAC domain-containing protein. (683 aa)
	A0A0E0PRJ6	Histone H2B; Belongs to the histone H2B family. (152 aa)
	A0A0E0PQJ8	XPGI domain-containing protein. (256 aa)
	A0A0E0PQ99	DNA_pol3_gamma3 domain-containing protein. (1083 aa)
	A0A0E0PP39	Uncharacterized protein. (636 aa)
	A0A0E0PNJ7	Histone H2B; Belongs to the histone H2B family. (118 aa)
	A0A0E0PGK4	Uncharacterized protein. (193 aa)
	A0A0E0NTD1	Histone H2B; Belongs to the histone H2B family. (152 aa)
	A0A0E0NTQ1	Macro domain-containing protein. (757 aa)
	A0A0E0NUC4	CMP/dCMP-type deaminase domain-containing protein. (88 aa)
	A0A0E0P2E5	AAA domain-containing protein. (353 aa)
	A0A0E0P3J7	CMP/dCMP-type deaminase domain-containing protein. (186 aa)
	A0A0E0P3J8	Uncharacterized protein. (639 aa)
	A0A0E0P3S8	Uncharacterized protein. (509 aa)
	A0A0E0P437	Uncharacterized protein. (547 aa)
	A0A0E0P5G0	CMP/dCMP-type deaminase domain-containing protein. (393 aa)
	A0A0E0PBK5	NAC domain-containing protein. (278 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0MR78	A0A0E0N218	A0A0E0MR78	A0A0E0N218	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.562
A0A0E0MR78	A0A0E0NFE0	A0A0E0MR78	A0A0E0NFE0	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.693
A0A0E0MR78	A0A0E0NJU4	A0A0E0MR78	A0A0E0NJU4	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A0E0MR78	A0A0E0NLL5	A0A0E0MR78	A0A0E0NLL5	Uncharacterized protein.	AAA domain-containing protein.	0.675
A0A0E0MR78	A0A0E0NMF4	A0A0E0MR78	A0A0E0NMF4	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.788
A0A0E0MR78	A0A0E0NSS6	A0A0E0MR78	A0A0E0NSS6	Uncharacterized protein.	AAA domain-containing protein.	0.706
A0A0E0MR78	A0A0E0P2E5	A0A0E0MR78	A0A0E0P2E5	Uncharacterized protein.	AAA domain-containing protein.	0.644
A0A0E0MR78	A0A0E0P3J8	A0A0E0MR78	A0A0E0P3J8	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0E0MR78	A0A0E0PCU4	A0A0E0MR78	A0A0E0PCU4	Uncharacterized protein.	AAA domain-containing protein.	0.690
A0A0E0MR78	A0A0E0PQ99	A0A0E0MR78	A0A0E0PQ99	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.562
A0A0E0MR78	A0A0E0PQJ8	A0A0E0MR78	A0A0E0PQJ8	Uncharacterized protein.	XPGI domain-containing protein.	0.535
A0A0E0MR78	A0A0E0PTF1	A0A0E0MR78	A0A0E0PTF1	Uncharacterized protein.	BRCT domain-containing protein.	0.554
A0A0E0MR78	A0A0E0QD83	A0A0E0MR78	A0A0E0QD83	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0E0MR78	A0A0E0QDQ7	A0A0E0MR78	A0A0E0QDQ7	Uncharacterized protein.	AAA domain-containing protein.	0.562
A0A0E0MR78	A0A0E0QU05	A0A0E0MR78	A0A0E0QU05	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0E0MR78	A0A0E0QVA0	A0A0E0MR78	A0A0E0QVA0	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.535
A0A0E0MR78	A0A0E0R0P3	A0A0E0MR78	A0A0E0R0P3	Uncharacterized protein.	DNA ligase.	0.583
A0A0E0MR78	A0A0E0R2U2	A0A0E0MR78	A0A0E0R2U2	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A0E0MR78	A0A0E0R6A8	A0A0E0MR78	A0A0E0R6A8	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.562
A0A0E0MR78	A0A0E0R9X8	A0A0E0MR78	A0A0E0R9X8	Uncharacterized protein.	Replication factor C subunit 1.	0.706