(10 nodes) VLDLR internalisation and degradation network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NEI5	Uncharacterized protein. (436 aa)
	A0A0E0NJG7	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (438 aa)
	A0A0E0NKG7	Rhodanese domain-containing protein. (387 aa)
	A0A0E0NNP0	Alpha_adaptinC2 domain-containing protein. (1132 aa)
	A0A0E0PHV9	Ubiquitin-like domain-containing protein. (155 aa)
	A0A0E0R335	Clathrin-link domain-containing protein. (1249 aa)
	A0A0E0RCL7	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1337 aa)
	A0A0E0RF32	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	A0A0E0MVN0	Ubiquitin-like domain-containing protein. (155 aa)
	A0A0E0NEI6	Uncharacterized protein. (488 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MVN0	A0A0E0NEI5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.606
A0A0E0MVN0	A0A0E0NEI6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.606
A0A0E0MVN0	A0A0E0NJG7	Ubiquitin-like domain-containing protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.738
A0A0E0MVN0	A0A0E0NKG7	Ubiquitin-like domain-containing protein.	Rhodanese domain-containing protein.	0.735
A0A0E0MVN0	A0A0E0NNP0	Ubiquitin-like domain-containing protein.	Alpha_adaptinC2 domain-containing protein.	0.738
A0A0E0MVN0	A0A0E0PHV9	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.931
A0A0E0MVN0	A0A0E0R335	Ubiquitin-like domain-containing protein.	Clathrin-link domain-containing protein.	0.701
A0A0E0MVN0	A0A0E0RCL7	Ubiquitin-like domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.701
A0A0E0MVN0	A0A0E0RF32	Ubiquitin-like domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.606
A0A0E0NEI5	A0A0E0MVN0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.606
A0A0E0NEI5	A0A0E0NJG7	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.975
A0A0E0NEI5	A0A0E0NKG7	Uncharacterized protein.	Rhodanese domain-containing protein.	0.975
A0A0E0NEI5	A0A0E0NNP0	Uncharacterized protein.	Alpha_adaptinC2 domain-containing protein.	0.991
A0A0E0NEI5	A0A0E0PHV9	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.606
A0A0E0NEI5	A0A0E0R335	Uncharacterized protein.	Clathrin-link domain-containing protein.	0.829
A0A0E0NEI5	A0A0E0RCL7	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.829
A0A0E0NEI6	A0A0E0MVN0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.606
A0A0E0NEI6	A0A0E0NJG7	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.975
A0A0E0NEI6	A0A0E0NKG7	Uncharacterized protein.	Rhodanese domain-containing protein.	0.975
A0A0E0NEI6	A0A0E0NNP0	Uncharacterized protein.	Alpha_adaptinC2 domain-containing protein.	0.991