(13 nodes) ATP synthase alpha/beta family, beta-barrel domain network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0N1I7	Uncharacterized protein. (598 aa)
	A0A0E0RGK4	ATP-synt_ab_N domain-containing protein. (95 aa)
	atpA	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (507 aa)
	atpB	ATP synthase subunit beta, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (498 aa)
	A0A0E0QNP4	ATP-synt_ab_N domain-containing protein. (115 aa)
	A0A0E0PZT3	Uncharacterized protein. (167 aa)
	A0A0E0NAK8	Uncharacterized protein. (621 aa)
	A0A0E0Q163	Uncharacterized protein. (601 aa)
	A0A0E0PQX2	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (1274 aa)
	A0A0E0P6A1	Uncharacterized protein. (359 aa)
	A0A0E0PZB5	Uncharacterized protein. (440 aa)
	A0A0E0MS57	ATP-synt_ab_N domain-containing protein. (116 aa)
	A0A0E0N0W9	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (557 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0MS57	A0A0E0N0W9	A0A0E0MS57	A0A0E0N0W9	ATP-synt_ab_N domain-containing protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.981
A0A0E0MS57	A0A0E0N1I7	A0A0E0MS57	A0A0E0N1I7	ATP-synt_ab_N domain-containing protein.	Uncharacterized protein.	0.810
A0A0E0MS57	A0A0E0NAK8	A0A0E0MS57	A0A0E0NAK8	ATP-synt_ab_N domain-containing protein.	Uncharacterized protein.	0.784
A0A0E0MS57	A0A0E0PQX2	A0A0E0MS57	A0A0E0PQX2	ATP-synt_ab_N domain-containing protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.979
A0A0E0MS57	A0A0E0PZB5	A0A0E0MS57	A0A0E0PZB5	ATP-synt_ab_N domain-containing protein.	Uncharacterized protein.	0.810
A0A0E0MS57	A0A0E0PZT3	A0A0E0MS57	A0A0E0PZT3	ATP-synt_ab_N domain-containing protein.	Uncharacterized protein.	0.961
A0A0E0MS57	A0A0E0Q163	A0A0E0MS57	A0A0E0Q163	ATP-synt_ab_N domain-containing protein.	Uncharacterized protein.	0.784
A0A0E0MS57	A0A0E0QNP4	A0A0E0MS57	A0A0E0QNP4	ATP-synt_ab_N domain-containing protein.	ATP-synt_ab_N domain-containing protein.	0.666
A0A0E0MS57	atpA	A0A0E0MS57	H6CSJ8	ATP-synt_ab_N domain-containing protein.	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	0.564
A0A0E0MS57	atpB	A0A0E0MS57	H6CST4	ATP-synt_ab_N domain-containing protein.	ATP synthase subunit beta, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.	0.960
A0A0E0N0W9	A0A0E0MS57	A0A0E0N0W9	A0A0E0MS57	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_ab_N domain-containing protein.	0.981
A0A0E0N0W9	A0A0E0N1I7	A0A0E0N0W9	A0A0E0N1I7	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.868
A0A0E0N0W9	A0A0E0NAK8	A0A0E0N0W9	A0A0E0NAK8	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.843
A0A0E0N0W9	A0A0E0P6A1	A0A0E0N0W9	A0A0E0P6A1	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.967
A0A0E0N0W9	A0A0E0PZB5	A0A0E0N0W9	A0A0E0PZB5	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.802
A0A0E0N0W9	A0A0E0Q163	A0A0E0N0W9	A0A0E0Q163	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.843
A0A0E0N0W9	A0A0E0QNP4	A0A0E0N0W9	A0A0E0QNP4	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_ab_N domain-containing protein.	0.954
A0A0E0N0W9	A0A0E0RGK4	A0A0E0N0W9	A0A0E0RGK4	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_ab_N domain-containing protein.	0.976
A0A0E0N0W9	atpA	A0A0E0N0W9	H6CSJ8	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	0.967
A0A0E0N1I7	A0A0E0MS57	A0A0E0N1I7	A0A0E0MS57	Uncharacterized protein.	ATP-synt_ab_N domain-containing protein.	0.810