(21 nodes) Ubiquitin associated domain network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0PW37	Uncharacterized protein. (413 aa)
	A0A0E0MS42	Ubiquitin carboxyl-terminal hydrolase. (798 aa)
	A0A0E0MUF8	UBA domain-containing protein. (292 aa)
	A0A0E0N3U2	UBA domain-containing protein. (315 aa)
	A0A0E0N714	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family. (195 aa)
	A0A0E0NAQ3	Uncharacterized protein. (389 aa)
	A0A0E0NB94	Uncharacterized protein. (415 aa)
	A0A0E0NF95	UBA domain-containing protein. (414 aa)
	A0A0E0NP91	Uncharacterized protein. (534 aa)
	A0A0E0NYZ0	UBA domain-containing protein. (428 aa)
	A0A0E0P5F9	Uncharacterized protein. (1164 aa)
	A0A0E0PES9	Uncharacterized protein. (560 aa)
	A0A0E0PQB0	Non-specific serine/threonine protein kinase. (505 aa)
	A0A0E0QJC1	Uncharacterized protein. (406 aa)
	A0A0E0QLH5	UBA domain-containing protein. (325 aa)
	A0A0E0QNK8	Uncharacterized protein. (3735 aa)
	A0A0E0QR87	Uncharacterized protein. (392 aa)
	A0A0E0R1Z3	Uncharacterized protein. (575 aa)
	A0A0E0R375	Uncharacterized protein. (1411 aa)
	A0A0E0RCR4	Uncharacterized protein. (436 aa)
	A0A0E0RGN1	Uncharacterized protein. (3645 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MS42	A0A0E0NAQ3	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.844
A0A0E0MS42	A0A0E0NP91	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.852
A0A0E0MS42	A0A0E0PW37	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.844
A0A0E0MS42	A0A0E0QJC1	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.844
A0A0E0MS42	A0A0E0QR87	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.844
A0A0E0MS42	A0A0E0R1Z3	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.852
A0A0E0N714	A0A0E0NAQ3	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.499
A0A0E0N714	A0A0E0NP91	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.513
A0A0E0N714	A0A0E0PW37	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.499
A0A0E0N714	A0A0E0QJC1	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.499
A0A0E0N714	A0A0E0QNK8	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.461
A0A0E0N714	A0A0E0QR87	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.499
A0A0E0N714	A0A0E0R1Z3	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.513
A0A0E0N714	A0A0E0RGN1	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.461
A0A0E0NAQ3	A0A0E0MS42	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.844
A0A0E0NAQ3	A0A0E0N714	Uncharacterized protein.	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	0.499
A0A0E0NAQ3	A0A0E0NB94	Uncharacterized protein.	Uncharacterized protein.	0.824
A0A0E0NAQ3	A0A0E0NP91	Uncharacterized protein.	Uncharacterized protein.	0.744
A0A0E0NAQ3	A0A0E0P5F9	Uncharacterized protein.	Uncharacterized protein.	0.417
A0A0E0NAQ3	A0A0E0PES9	Uncharacterized protein.	Uncharacterized protein.	0.767