(84 nodes) PHD zinc finger network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MSB5	Uncharacterized protein. (605 aa)
	A0A0E0MT53	Uncharacterized protein. (1671 aa)
	A0A0E0MTU3	Uncharacterized protein. (1208 aa)
	A0A0E0MX37	Uncharacterized protein. (1371 aa)
	A0A0E0N5X7	Uncharacterized protein. (865 aa)
	A0A0E0MXU0	Uncharacterized protein. (1222 aa)
	A0A0E0N056	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (1022 aa)
	A0A0E0N5S1	PHD domain-containing protein. (716 aa)
	A0A0E0N607	PHD-type domain-containing protein. (270 aa)
	A0A0E0N816	Uncharacterized protein. (383 aa)
	A0A0E0N818	N-acetyltransferase domain-containing protein. (895 aa)
	A0A0E0N9U1	Uncharacterized protein. (681 aa)
	A0A0E0NGI3	PHD-type domain-containing protein. (267 aa)
	A0A0E0NIR0	Uncharacterized protein. (123 aa)
	A0A0E0NLF4	Uncharacterized protein. (1486 aa)
	A0A0E0NNP2	Uncharacterized protein. (1719 aa)
	A0A0E0NPJ0	PHD finger protein ING. (186 aa)
	A0A0E0NS74	OBERON-like protein; Probable transcription factor. (731 aa)
	A0A0E0NSX4	Uncharacterized protein. (343 aa)
	A0A0E0NTC9	N-acetyltransferase domain-containing protein. (1048 aa)
	A0A0E0NTY1	Uncharacterized protein. (799 aa)
	A0A0E0P0H1	PHD domain-containing protein. (697 aa)
	A0A0E0P0I9	Uncharacterized protein. (827 aa)
	A0A0E0P197	Uncharacterized protein. (1367 aa)
	A0A0E0P1A6	Uncharacterized protein. (284 aa)
	A0A0E0P2M0	Uncharacterized protein. (218 aa)
	A0A0E0P344	PHD-type domain-containing protein. (245 aa)
	A0A0E0P634	PHD domain-containing protein. (1004 aa)
	A0A0E0P968	Uncharacterized protein. (437 aa)
	A0A0E0P9E0	Uncharacterized protein. (1509 aa)
	A0A0E0P9Q1	PHD-type domain-containing protein. (256 aa)
	A0A0E0PBI1	Uncharacterized protein. (629 aa)
	A0A0E0PCD9	Uncharacterized protein. (124 aa)
	A0A0E0PG63	Uncharacterized protein. (1497 aa)
	A0A0E0PGX6	Uncharacterized protein. (862 aa)
	A0A0E0PHY8	PHD-type domain-containing protein. (258 aa)
	A0A0E0PID7	Uncharacterized protein. (175 aa)
	A0A0E0PML8	PHD-type domain-containing protein. (258 aa)
	A0A0E0PMN4	Uncharacterized protein. (728 aa)
	A0A0E0PP71	Uncharacterized protein. (510 aa)
	A0A0E0PSA7	PHD-type domain-containing protein. (1025 aa)
	A0A0E0PUY0	Uncharacterized protein. (1436 aa)
	A0A0E0PVF1	Uncharacterized protein. (885 aa)
	A0A0E0PYN9	UBR-type domain-containing protein. (420 aa)
	A0A0E0Q2C4	Uncharacterized protein. (1654 aa)
	A0A0E0Q2Z4	PHD-type domain-containing protein. (752 aa)
	A0A0E0Q2Z9	Uncharacterized protein. (1737 aa)
	A0A0E0Q4N5	Uncharacterized protein. (1442 aa)
	A0A0E0Q5X3	PHD-type domain-containing protein. (244 aa)
	A0A0E0Q8L0	Uncharacterized protein. (2267 aa)
	A0A0E0N5V1	Uncharacterized protein. (1134 aa)
	A0A0E0QB21	PHD-type domain-containing protein. (278 aa)
	A0A0E0QCA8	Uncharacterized protein. (1732 aa)
	A0A0E0QCT7	Uncharacterized protein. (1686 aa)
	A0A0E0QD19	Uncharacterized protein. (786 aa)
	A0A0E0QD43	Uncharacterized protein. (748 aa)
	A0A0E0QDC5	Uncharacterized protein. (563 aa)
	A0A0E0QFS5	PHD-type domain-containing protein. (1233 aa)
	A0A0E0QHL0	Uncharacterized protein. (1370 aa)
	A0A0E0QHL2	Uncharacterized protein. (1295 aa)
	A0A0E0QJ00	Uncharacterized protein. (472 aa)
	A0A0E0QJ51	Uncharacterized protein. (216 aa)
	A0A0E0QJS5	ARID domain-containing protein. (794 aa)
	A0A0E0QN85	Uncharacterized protein. (1048 aa)
	A0A0E0QQW3	Uncharacterized protein. (216 aa)
	A0A0E0QRT1	ARID domain-containing protein. (782 aa)
	A0A0E0QS56	PHD domain-containing protein. (683 aa)
	A0A0E0QT57	Phorbol-ester/DAG-type domain-containing protein. (284 aa)
	A0A0E0QU74	Uncharacterized protein. (1835 aa)
	A0A0E0QUZ0	Uncharacterized protein. (1764 aa)
	A0A0E0R046	Uncharacterized protein. (2023 aa)
	A0A0E0R1B4	Uncharacterized protein. (1726 aa)
	A0A0E0R478	Uncharacterized protein. (1884 aa)
	A0A0E0R4I7	Uncharacterized protein. (703 aa)
	A0A0E0R650	PHD-type domain-containing protein. (745 aa)
	A0A0E0R6B0	PHD-type domain-containing protein. (254 aa)
	A0A0E0R744	PHD-type domain-containing protein. (1064 aa)
	A0A0E0R8E7	PHD domain-containing protein. (961 aa)
	A0A0E0RBB5	PHD_Oberon domain-containing protein. (515 aa)
	A0A0E0RGQ1	PHD-type domain-containing protein. (1312 aa)
	A0A0E0RHW8	OBERON-like protein; Probable transcription factor. (696 aa)
	A0A0E0RI42	Uncharacterized protein. (886 aa)
	A0A0E0RE51	PHD domain-containing protein. (820 aa)
	A0A0E0RF80	Uncharacterized protein. (345 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MSB5	A0A0E0N5V1	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A0E0MSB5	A0A0E0NPJ0	Uncharacterized protein.	PHD finger protein ING.	0.545
A0A0E0MSB5	A0A0E0P1A6	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A0E0MSB5	A0A0E0Q8L0	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A0E0MT53	A0A0E0MTU3	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A0E0MT53	A0A0E0N5S1	Uncharacterized protein.	PHD domain-containing protein.	0.476
A0A0E0MT53	A0A0E0N816	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A0E0MT53	A0A0E0N9U1	Uncharacterized protein.	Uncharacterized protein.	0.428
A0A0E0MT53	A0A0E0P0H1	Uncharacterized protein.	PHD domain-containing protein.	0.476
A0A0E0MT53	A0A0E0P2M0	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A0E0MT53	A0A0E0PVF1	Uncharacterized protein.	Uncharacterized protein.	0.470
A0A0E0MT53	A0A0E0Q2C4	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A0E0MT53	A0A0E0Q2Z9	Uncharacterized protein.	Uncharacterized protein.	0.472
A0A0E0MT53	A0A0E0QCA8	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A0E0MT53	A0A0E0QDC5	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A0E0MT53	A0A0E0QJ00	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A0E0MT53	A0A0E0QJ51	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A0E0MT53	A0A0E0QQW3	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A0E0MT53	A0A0E0QS56	Uncharacterized protein.	PHD domain-containing protein.	0.476
A0A0E0MT53	A0A0E0R650	Uncharacterized protein.	PHD-type domain-containing protein.	0.476