10 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NIE4	Uncharacterized protein. (578 aa)
	A0A0E0R1Z3	Uncharacterized protein. (575 aa)
	A0A0E0QR87	Uncharacterized protein. (392 aa)
	A0A0E0QJC1	Uncharacterized protein. (406 aa)
	A0A0E0PW37	Uncharacterized protein. (413 aa)
	A0A0E0PC32	Uncharacterized protein. (611 aa)
	A0A0E0P9J0	Uncharacterized protein. (426 aa)
	A0A0E0NP91	Uncharacterized protein. (534 aa)
	A0A0E0N8E0	TPR_REGION domain-containing protein. (411 aa)
	A0A0E0NAQ3	Uncharacterized protein. (389 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0NAQ3	A0A0E0NIE4	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A0E0NAQ3	A0A0E0NP91	Uncharacterized protein.	Uncharacterized protein.	0.744
A0A0E0NAQ3	A0A0E0PC32	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A0E0NAQ3	A0A0E0PW37	Uncharacterized protein.	Uncharacterized protein.	0.934
A0A0E0NAQ3	A0A0E0QJC1	Uncharacterized protein.	Uncharacterized protein.	0.848
A0A0E0NAQ3	A0A0E0QR87	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A0E0NAQ3	A0A0E0R1Z3	Uncharacterized protein.	Uncharacterized protein.	0.744
A0A0E0NIE4	A0A0E0NAQ3	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A0E0NIE4	A0A0E0NP91	Uncharacterized protein.	Uncharacterized protein.	0.453
A0A0E0NIE4	A0A0E0PW37	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A0E0NIE4	A0A0E0QJC1	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A0E0NIE4	A0A0E0QR87	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A0E0NIE4	A0A0E0R1Z3	Uncharacterized protein.	Uncharacterized protein.	0.453
A0A0E0NP91	A0A0E0NAQ3	Uncharacterized protein.	Uncharacterized protein.	0.744
A0A0E0NP91	A0A0E0NIE4	Uncharacterized protein.	Uncharacterized protein.	0.453
A0A0E0NP91	A0A0E0PC32	Uncharacterized protein.	Uncharacterized protein.	0.453
A0A0E0NP91	A0A0E0PW37	Uncharacterized protein.	Uncharacterized protein.	0.744
A0A0E0NP91	A0A0E0QJC1	Uncharacterized protein.	Uncharacterized protein.	0.744
A0A0E0NP91	A0A0E0QR87	Uncharacterized protein.	Uncharacterized protein.	0.744
A0A0E0NP91	A0A0E0R1Z3	Uncharacterized protein.	Uncharacterized protein.	0.873