(41 nodes) Glycosaminoglycan degradation network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0QUG5	Beta-galactosidase. (838 aa)
	A0A0E0PM04	Glyco_hydro_20 domain-containing protein. (208 aa)
	A0A0E0PHR8	DUF1624 domain-containing protein. (461 aa)
	A0A0E0PGP7	Beta-hexosaminidase. (519 aa)
	A0A0E0PEY9	Uncharacterized protein. (796 aa)
	A0A0E0NV93	Uncharacterized protein. (791 aa)
	A0A0E0P8P5	DUF1624 domain-containing protein. (435 aa)
	A0A0E0P413	Uncharacterized protein. (515 aa)
	A0A0E0NXW5	Usp domain-containing protein. (292 aa)
	A0A0E0PPI9	Myb_DNA-bind_3 domain-containing protein. (204 aa)
	A0A0E0PMU0	Glyco_hydro_35 domain-containing protein. (74 aa)
	A0A0E0PMT8	Beta-galactosidase. (792 aa)
	A0A0E0PMJ1	Beta-hexosaminidase. (562 aa)
	A0A0E0PQI9	Uncharacterized protein; Belongs to the glycosyl hydrolase 35 family. (671 aa)
	A0A0E0PU79	Uncharacterized protein. (541 aa)
	A0A0E0PZE9	Beta-galactosidase. (716 aa)
	A0A0E0QA83	Beta-hexosaminidase. (563 aa)
	A0A0E0QAT4	Uncharacterized protein. (515 aa)
	A0A0E0QL45	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (273 aa)
	A0A0E0QM35	Beta-galactosidase. (882 aa)
	A0A0E0QXU2	Beta-galactosidase. (829 aa)
	A0A0E0R6C2	DUF1624 domain-containing protein. (447 aa)
	A0A0E0R933	Uncharacterized protein. (187 aa)
	A0A0E0R9G0	DUF1624 domain-containing protein. (391 aa)
	A0A0E0RGN4	Beta-galactosidase. (899 aa)
	A0A0E0RJ57	Uncharacterized protein. (566 aa)
	A0A0E0MRS1	Uncharacterized protein. (330 aa)
	A0A0E0MXU8	Uncharacterized protein. (210 aa)
	A0A0E0MYG5	Beta-galactosidase. (822 aa)
	A0A0E0N5Q2	SUEL-type lectin domain-containing protein. (851 aa)
	A0A0E0N635	Beta-hexosaminidase. (503 aa)
	A0A0E0N765	DUF1624 domain-containing protein. (488 aa)
	A0A0E0NBT1	Beta-galactosidase. (729 aa)
	A0A0E0NFQ7	DUF1624 domain-containing protein. (436 aa)
	A0A0E0NMB8	Uncharacterized protein. (686 aa)
	A0A0E0NQ49	SUEL-type lectin domain-containing protein. (835 aa)
	A0A0E0NQX4	Uncharacterized protein. (134 aa)
	A0A0E0NRF0	Remorin_C domain-containing protein. (323 aa)
	A0A0E0NRF3	Uncharacterized protein. (542 aa)
	A0A0E0NRP2	Beta-hexosaminidase. (617 aa)
	A0A0E0NSM2	Beta-galactosidase. (952 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MXU8	A0A0E0N635	Uncharacterized protein.	Beta-hexosaminidase.	0.421
A0A0E0MXU8	A0A0E0NRP2	Uncharacterized protein.	Beta-hexosaminidase.	0.421
A0A0E0MXU8	A0A0E0PGP7	Uncharacterized protein.	Beta-hexosaminidase.	0.421
A0A0E0MXU8	A0A0E0PM04	Uncharacterized protein.	Glyco_hydro_20 domain-containing protein.	0.421
A0A0E0MXU8	A0A0E0PMJ1	Uncharacterized protein.	Beta-hexosaminidase.	0.421
A0A0E0MXU8	A0A0E0QA83	Uncharacterized protein.	Beta-hexosaminidase.	0.421
A0A0E0MYG5	A0A0E0N635	Beta-galactosidase.	Beta-hexosaminidase.	0.421
A0A0E0MYG5	A0A0E0NRP2	Beta-galactosidase.	Beta-hexosaminidase.	0.699
A0A0E0MYG5	A0A0E0PGP7	Beta-galactosidase.	Beta-hexosaminidase.	0.870
A0A0E0MYG5	A0A0E0PM04	Beta-galactosidase.	Glyco_hydro_20 domain-containing protein.	0.699
A0A0E0MYG5	A0A0E0PMJ1	Beta-galactosidase.	Beta-hexosaminidase.	0.421
A0A0E0MYG5	A0A0E0PQI9	Beta-galactosidase.	Uncharacterized protein; Belongs to the glycosyl hydrolase 35 family.	0.878
A0A0E0MYG5	A0A0E0QA83	Beta-galactosidase.	Beta-hexosaminidase.	0.699
A0A0E0N5Q2	A0A0E0N635	SUEL-type lectin domain-containing protein.	Beta-hexosaminidase.	0.421
A0A0E0N5Q2	A0A0E0NRP2	SUEL-type lectin domain-containing protein.	Beta-hexosaminidase.	0.421
A0A0E0N5Q2	A0A0E0PGP7	SUEL-type lectin domain-containing protein.	Beta-hexosaminidase.	0.421
A0A0E0N5Q2	A0A0E0PM04	SUEL-type lectin domain-containing protein.	Glyco_hydro_20 domain-containing protein.	0.421
A0A0E0N5Q2	A0A0E0PMJ1	SUEL-type lectin domain-containing protein.	Beta-hexosaminidase.	0.421
A0A0E0N5Q2	A0A0E0QA83	SUEL-type lectin domain-containing protein.	Beta-hexosaminidase.	0.421
A0A0E0N635	A0A0E0MXU8	Beta-hexosaminidase.	Uncharacterized protein.	0.421