(59 nodes) Propanoate metabolism network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0P2N4	Uncharacterized protein. (241 aa)
	accD	Acetyl-CoA carboxylase carboxyltransferase beta subunit. (106 aa)
	A0A0E0RJQ6	TPR_REGION domain-containing protein. (365 aa)
	A0A0E0RI70	Fibronectin type-III domain-containing protein. (707 aa)
	A0A0E0RFP4	Uncharacterized protein. (603 aa)
	A0A0E0RFF0	Rubis-subs-bind domain-containing protein. (469 aa)
	A0A0E0REN9	E1_dh domain-containing protein. (522 aa)
	A0A0E0RAP8	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (699 aa)
	A0A0E0R2S7	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (353 aa)
	A0A0E0R2A5	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (412 aa)
	A0A0E0QY51	Uncharacterized protein. (2281 aa)
	A0A0E0QUK8	Uncharacterized protein. (334 aa)
	A0A0E0QRB6	SET domain-containing protein. (495 aa)
	A0A0E0QR06	Uncharacterized protein. (735 aa)
	A0A0E0QNK4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
	A0A0E0QG79	SET domain-containing protein. (489 aa)
	A0A0E0QA99	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (331 aa)
	A0A0E0Q806	SET domain-containing protein. (479 aa)
	A0A0E0Q7U2	Uncharacterized protein. (56 aa)
	A0A0E0Q528	Aldedh domain-containing protein. (534 aa)
	A0A0E0Q226	RNase H domain-containing protein. (200 aa)
	A0A0E0Q1L6	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (342 aa)
	A0A0E0PZQ9	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (375 aa)
	A0A0E0PXN1	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (683 aa)
	A0A0E0PXK5	Uncharacterized protein. (416 aa)
	A0A0E0PXJ8	Uncharacterized protein. (410 aa)
	A0A0E0PSW2	Protein kinase domain-containing protein. (1028 aa)
	A0A0E0PSE6	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (360 aa)
	A0A0E0PSD1	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (669 aa)
	A0A0E0PRW7	SET domain-containing protein. (457 aa)
	A0A0E0PK84	Uncharacterized protein. (2409 aa)
	A0A0E0PHZ6	Uncharacterized protein. (430 aa)
	A0A0E0PHV7	Dihydrolipoyl dehydrogenase. (504 aa)
	A0A0E0PHS6	Dihydrolipoyl dehydrogenase. (590 aa)
	A0A0E0PHF3	Fibronectin type-III domain-containing protein. (607 aa)
	A0A0E0PFP7	Uncharacterized protein. (1317 aa)
	A0A0E0P8P3	Acetyl-coenzyme A synthetase. (747 aa)
	A0A0E0P5C4	Uncharacterized protein. (211 aa)
	A0A0E0NZ57	Pyr_redox domain-containing protein. (229 aa)
	A0A0E0NU48	Uncharacterized protein. (312 aa)
	A0A0E0NRN0	Uncharacterized protein. (99 aa)
	A0A0E0NRM9	Uncharacterized protein. (305 aa)
	A0A0E0NRI1	Uncharacterized protein. (2032 aa)
	A0A0E0NKC8	SET domain-containing protein; Belongs to the glycosyltransferase 2 family. (1242 aa)
	A0A0E0NHX7	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (422 aa)
	A0A0E0NHU1	Uncharacterized protein. (1186 aa)
	A0A0E0NFQ6	Acetyl-coenzyme A synthetase. (705 aa)
	A0A0E0N9Z2	Fibronectin type-III domain-containing protein. (749 aa)
	A0A0E0N8K9	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (392 aa)
	A0A0E0N7X9	Uncharacterized protein. (330 aa)
	A0A0E0N5U0	N-lysine methyltransferase; Protein-lysine N-methyltransferase. Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SETD6 subfamily. (495 aa)
	A0A0E0N2I0	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (353 aa)
	A0A0E0N2H5	DUF1084 domain-containing protein. (300 aa)
	A0A0E0MVT4	Dihydrolipoyl dehydrogenase. (561 aa)
	A0A0E0MVN3	Dihydrolipoyl dehydrogenase. (503 aa)
	A0A0E0MVE8	Uncharacterized protein. (870 aa)
	A0A0E0MRM6	Uncharacterized protein. (433 aa)
	A0A0E0MQG9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (416 aa)
	NAC4	NAC transcription factor 4. (232 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0MQG9	A0A0E0MRM6	A0A0E0MQG9	A0A0E0MRM6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.979
A0A0E0MQG9	A0A0E0MVE8	A0A0E0MQG9	A0A0E0MVE8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.558
A0A0E0MQG9	A0A0E0N2H5	A0A0E0MQG9	A0A0E0N2H5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	DUF1084 domain-containing protein.	0.901
A0A0E0MQG9	A0A0E0N2I0	A0A0E0MQG9	A0A0E0N2I0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.897
A0A0E0MQG9	A0A0E0N7X9	A0A0E0MQG9	A0A0E0N7X9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.897
A0A0E0MQG9	A0A0E0N9Z2	A0A0E0MQG9	A0A0E0N9Z2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Fibronectin type-III domain-containing protein.	0.897
A0A0E0MQG9	A0A0E0NFQ6	A0A0E0MQG9	A0A0E0NFQ6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acetyl-coenzyme A synthetase.	0.970
A0A0E0MQG9	A0A0E0NHX7	A0A0E0MQG9	A0A0E0NHX7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.922
A0A0E0MQG9	A0A0E0NU48	A0A0E0MQG9	A0A0E0NU48	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.929
A0A0E0MQG9	A0A0E0P2N4	A0A0E0MQG9	A0A0E0P2N4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.865
A0A0E0MQG9	A0A0E0P5C4	A0A0E0MQG9	A0A0E0P5C4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.897
A0A0E0MQG9	A0A0E0P8P3	A0A0E0MQG9	A0A0E0P8P3	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acetyl-coenzyme A synthetase.	0.970
A0A0E0MQG9	A0A0E0PHF3	A0A0E0MQG9	A0A0E0PHF3	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Fibronectin type-III domain-containing protein.	0.897
A0A0E0MQG9	A0A0E0PHZ6	A0A0E0MQG9	A0A0E0PHZ6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.979
A0A0E0MQG9	A0A0E0PK84	A0A0E0MQG9	A0A0E0PK84	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.959
A0A0E0MQG9	A0A0E0PSD1	A0A0E0MQG9	A0A0E0PSD1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.983
A0A0E0MQG9	A0A0E0PXJ8	A0A0E0MQG9	A0A0E0PXJ8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.906
A0A0E0MQG9	A0A0E0PXK5	A0A0E0MQG9	A0A0E0PXK5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.906
A0A0E0MQG9	A0A0E0PXN1	A0A0E0MQG9	A0A0E0PXN1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.978
A0A0E0MQG9	A0A0E0PZQ9	A0A0E0MQG9	A0A0E0PZQ9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.897