(50 nodes) Autophagy - other network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MSQ2	Autophagy-related protein 3. (354 aa)
	A0A0E0MZ91	Uncharacterized protein. (1041 aa)
	A0A0E0N0T2	Uncharacterized protein. (495 aa)
	A0A0E0N8W4	Autophagy protein 5; Required for autophagy. (380 aa)
	A0A0E0NA99	Hexosyltransferase; Belongs to the glycosyltransferase 31 family. (403 aa)
	A0A0E0NAQ8	Integrase-type domain-containing protein. (1140 aa)
	A0A0E0NBR3	Serine/threonine-protein phosphatase. (307 aa)
	A0A0E0NFT4	Autophagy-related protein. (87 aa)
	A0A0E0NFW1	Autophagy-related protein. (213 aa)
	A0A0E0NIE6	ATG13 domain-containing protein. (544 aa)
	A0A0E0NM04	Uncharacterized protein. (374 aa)
	A0A0E0NM56	Uncharacterized protein. (1491 aa)
	A0A0E0NNY6	Protein kinase domain-containing protein. (657 aa)
	A0A0E0NQ74	Serine/threonine-protein phosphatase. (314 aa)
	A0A0E0NSG1	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (806 aa)
	A0A0E0NSP8	Uncharacterized protein. (393 aa)
	A0A0E0NSZ3	Protein kinase domain-containing protein. (696 aa)
	A0A0E0NW20	Cysteine protease. (474 aa)
	A0A0E0NXH5	Hexosyltransferase; Belongs to the glycosyltransferase 31 family. (355 aa)
	A0A0E0NYT2	Uncharacterized protein. (648 aa)
	A0A0E0NZL4	WD_REPEATS_REGION domain-containing protein. (296 aa)
	A0A0E0P184	WD_REPEATS_REGION domain-containing protein. (511 aa)
	A0A0E0P2S7	Serine/threonine-protein phosphatase. (363 aa)
	A0A0E0PC39	ATG13 domain-containing protein. (520 aa)
	A0A0E0PEA7	Autophagy-related protein. (119 aa)
	A0A0E0PFW8	Cysteine protease. (522 aa)
	A0A0E0PIA9	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (815 aa)
	A0A0E0PJB8	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2298 aa)
	A0A0E0PKG6	Uncharacterized protein. (801 aa)
	A0A0E0PUU5	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family. (228 aa)
	A0A0E0PW71	Uncharacterized protein. (1918 aa)
	A0A0E0PZG1	Serine/threonine-protein phosphatase. (306 aa)
	A0A0E0Q1N5	Hexosyltransferase; Belongs to the glycosyltransferase 31 family. (395 aa)
	A0A0E0Q8W0	Autophagy-related protein. (119 aa)
	A0A0E0QDM3	Hexosyltransferase; Belongs to the glycosyltransferase 31 family. (388 aa)
	A0A0E0QFB7	Autophagy-related protein. (191 aa)
	A0A0E0QH65	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (901 aa)
	A0A0E0QS86	Hexosyltransferase; Belongs to the glycosyltransferase 31 family. (393 aa)
	A0A0E0QWN1	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (926 aa)
	A0A0E0QZ01	Serine/threonine-protein phosphatase. (284 aa)
	A0A0E0R2G1	Autophagy-related protein 3. (273 aa)
	A0A0E0R389	WD_REPEATS_REGION domain-containing protein. (1436 aa)
	A0A0E0R410	Uncharacterized protein. (418 aa)
	A0A0E0R4L1	ATG13 domain-containing protein. (601 aa)
	A0A0E0RCG0	Autophagy-related protein. (118 aa)
	A0A0E0RCS2	WD_REPEATS_REGION domain-containing protein. (331 aa)
	A0A0E0RDI5	Uncharacterized protein. (418 aa)
	A0A0E0RGM7	TAXi_N domain-containing protein. (661 aa)
	A0A0E0RGW5	Uncharacterized protein. (247 aa)
	A0A0E0RHP6	Autophagy_act_C domain-containing protein. (226 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MSQ2	A0A0E0MZ91	Autophagy-related protein 3.	Uncharacterized protein.	0.983
A0A0E0MSQ2	A0A0E0N0T2	Autophagy-related protein 3.	Uncharacterized protein.	0.853
A0A0E0MSQ2	A0A0E0N8W4	Autophagy-related protein 3.	Autophagy protein 5; Required for autophagy.	0.993
A0A0E0MSQ2	A0A0E0NAQ8	Autophagy-related protein 3.	Integrase-type domain-containing protein.	0.465
A0A0E0MSQ2	A0A0E0NFT4	Autophagy-related protein 3.	Autophagy-related protein.	0.977
A0A0E0MSQ2	A0A0E0NFW1	Autophagy-related protein 3.	Autophagy-related protein.	0.953
A0A0E0MSQ2	A0A0E0NIE6	Autophagy-related protein 3.	ATG13 domain-containing protein.	0.596
A0A0E0MSQ2	A0A0E0NM04	Autophagy-related protein 3.	Uncharacterized protein.	0.879
A0A0E0MSQ2	A0A0E0NM56	Autophagy-related protein 3.	Uncharacterized protein.	0.834
A0A0E0MSQ2	A0A0E0NNY6	Autophagy-related protein 3.	Protein kinase domain-containing protein.	0.898
A0A0E0MSQ2	A0A0E0NSG1	Autophagy-related protein 3.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.403
A0A0E0MSQ2	A0A0E0NSP8	Autophagy-related protein 3.	Uncharacterized protein.	0.853
A0A0E0MSQ2	A0A0E0NSZ3	Autophagy-related protein 3.	Protein kinase domain-containing protein.	0.898
A0A0E0MSQ2	A0A0E0NW20	Autophagy-related protein 3.	Cysteine protease.	0.748
A0A0E0MSQ2	A0A0E0NYT2	Autophagy-related protein 3.	Uncharacterized protein.	0.853
A0A0E0MSQ2	A0A0E0P184	Autophagy-related protein 3.	WD_REPEATS_REGION domain-containing protein.	0.995
A0A0E0MSQ2	A0A0E0PC39	Autophagy-related protein 3.	ATG13 domain-containing protein.	0.596
A0A0E0MSQ2	A0A0E0PEA7	Autophagy-related protein 3.	Autophagy-related protein.	0.980
A0A0E0MSQ2	A0A0E0PFW8	Autophagy-related protein 3.	Cysteine protease.	0.748
A0A0E0MSQ2	A0A0E0PIA9	Autophagy-related protein 3.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.825