(5 nodes) Phagophore, and Methyltransferase-like protein 22 network (Oryza brachyantha)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	J3KYM9_ORYBR	UBA domain-containing protein. (292 aa)
	J3L520_ORYBR	UBA domain-containing protein. (289 aa)
	J3ML49_ORYBR	RING-type domain-containing protein. (515 aa)
	J3MNG8_ORYBR	Uncharacterized protein. (244 aa)
	J3MZD0_ORYBR	UBX domain-containing protein. (563 aa)

Your Current Organism:

Oryza brachyantha

NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J3KYM9_ORYBR	J3ML49_ORYBR	J3KYM9	J3ML49	UBA domain-containing protein.	RING-type domain-containing protein.	0.766
J3KYM9_ORYBR	J3MZD0_ORYBR	J3KYM9	J3MZD0	UBA domain-containing protein.	UBX domain-containing protein.	0.622
J3L520_ORYBR	J3ML49_ORYBR	J3L520	J3ML49	UBA domain-containing protein.	RING-type domain-containing protein.	0.766
J3L520_ORYBR	J3MZD0_ORYBR	J3L520	J3MZD0	UBA domain-containing protein.	UBX domain-containing protein.	0.622
J3ML49_ORYBR	J3KYM9_ORYBR	J3ML49	J3KYM9	RING-type domain-containing protein.	UBA domain-containing protein.	0.766
J3ML49_ORYBR	J3L520_ORYBR	J3ML49	J3L520	RING-type domain-containing protein.	UBA domain-containing protein.	0.766
J3ML49_ORYBR	J3MNG8_ORYBR	J3ML49	J3MNG8	RING-type domain-containing protein.	Uncharacterized protein.	0.766
J3ML49_ORYBR	J3MZD0_ORYBR	J3ML49	J3MZD0	RING-type domain-containing protein.	UBX domain-containing protein.	0.667
J3MNG8_ORYBR	J3ML49_ORYBR	J3MNG8	J3ML49	Uncharacterized protein.	RING-type domain-containing protein.	0.766
J3MNG8_ORYBR	J3MZD0_ORYBR	J3MNG8	J3MZD0	Uncharacterized protein.	UBX domain-containing protein.	0.622
J3MZD0_ORYBR	J3KYM9_ORYBR	J3MZD0	J3KYM9	UBX domain-containing protein.	UBA domain-containing protein.	0.622
J3MZD0_ORYBR	J3L520_ORYBR	J3MZD0	J3L520	UBX domain-containing protein.	UBA domain-containing protein.	0.622
J3MZD0_ORYBR	J3ML49_ORYBR	J3MZD0	J3ML49	UBX domain-containing protein.	RING-type domain-containing protein.	0.667
J3MZD0_ORYBR	J3MNG8_ORYBR	J3MZD0	J3MNG8	UBX domain-containing protein.	Uncharacterized protein.	0.622