(47 nodes) Lambda repressor-like, DNA-binding domain superfamily network (Agromyces aureus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANJ25478.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
	ANJ25484.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	ANJ28608.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	ANJ28609.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	ATC03_01290	MFS transporter permease; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	ANJ25623.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	ANJ25625.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (187 aa)
	ANJ25685.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	ANJ25719.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (410 aa)
	ANJ28631.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	ANJ28665.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	ANJ25918.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	ANJ28683.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	ANJ25943.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (350 aa)
	ANJ28690.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	ANJ25972.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (384 aa)
	ANJ28704.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	ANJ26049.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (205 aa)
	ANJ26102.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	ANJ26108.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (191 aa)
	ANJ28717.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	ANJ26118.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	ANJ26143.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (173 aa)
	ANJ26175.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	ATC03_04995	Oxidoreductase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	ANJ26197.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	ATC03_05155	Phosphoesterase PA-phosphatase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	ANJ26456.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa)
	ANJ26624.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (315 aa)
	ANJ26778.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (81 aa)
	ANJ26779.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (85 aa)
	ANJ28842.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
	ANJ27148.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	ANJ27317.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	ANJ28903.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	ANJ27435.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
	ANJ27748.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	ANJ27789.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	ANJ28992.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	ANJ27942.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	ANJ27954.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
	ANJ27994.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	ANJ28086.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	ANJ28217.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (200 aa)
	ANJ28483.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	ANJ28560.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	ANJ28565.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (336 aa)

Your Current Organism:

Agromyces aureus

NCBI taxonomy Id: 453304
Other names: A. aureus, Agromyces aureus Corretto et al. 2016, Agromyces sp. AR33, DSM 101731, LMG 29235, LMG:29235, strain AR33

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANJ25484.1	ANJ25972.1	ATC03_00570	ATC03_03710	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.755
ANJ25484.1	ANJ26143.1	ATC03_00570	ATC03_04765	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.569
ANJ25484.1	ANJ26175.1	ATC03_00570	ATC03_04965	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
ANJ25484.1	ANJ26624.1	ATC03_00570	ATC03_07760	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
ANJ25484.1	ANJ27148.1	ATC03_00570	ATC03_10850	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
ANJ25623.1	ANJ26143.1	ATC03_01430	ATC03_04765	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.443
ANJ25623.1	ANJ26624.1	ATC03_01430	ATC03_07760	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.753
ANJ25623.1	ANJ28565.1	ATC03_01430	ATC03_19530	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.709
ANJ25685.1	ANJ26143.1	ATC03_01815	ATC03_04765	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.579
ANJ25685.1	ANJ26624.1	ATC03_01815	ATC03_07760	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.771
ANJ25918.1	ANJ26143.1	ATC03_03350	ATC03_04765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.592
ANJ25918.1	ANJ26624.1	ATC03_03350	ATC03_07760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
ANJ25918.1	ANJ28565.1	ATC03_03350	ATC03_19530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.759
ANJ25943.1	ANJ26143.1	ATC03_03510	ATC03_04765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.656
ANJ25943.1	ANJ28565.1	ATC03_03510	ATC03_19530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.767
ANJ25972.1	ANJ25484.1	ATC03_03710	ATC03_00570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
ANJ25972.1	ANJ28565.1	ATC03_03710	ATC03_19530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.765
ANJ26102.1	ANJ27317.1	ATC03_04485	ATC03_11905	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
ANJ26118.1	ANJ26143.1	ATC03_04605	ATC03_04765	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.608
ANJ26143.1	ANJ25484.1	ATC03_04765	ATC03_00570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569