(15 nodes) tRNA 5-leader removal network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g198581	Predicted protein. (123 aa)
	v1g200333	Predicted protein. (367 aa)
	v1g236602	Predicted protein. (128 aa)
	v1g240928	Predicted protein. (181 aa)
	v1g241912	Predicted protein. (177 aa)
	v1g242151	Protein FMC1 homolog; Belongs to the FMC1 family. (103 aa)
	v1g205577	Predicted protein. (271 aa)
	v1g209074	Predicted protein. (321 aa)
	v1g237062	Predicted protein. (214 aa)
	v1g168328	Predicted protein. (824 aa)
	v1g244487	Predicted protein. (211 aa)
	v1g118883	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (184 aa)
	v1g246439	Predicted protein. (134 aa)
	v1g195753	Predicted protein. (148 aa)
	v1g222887	Predicted protein. (107 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g118883	v1g168328	A7SHU0	A7SAE7	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.984
v1g118883	v1g195753	A7SHU0	A7T4E5	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.999
v1g118883	v1g198581	A7SHU0	A7RKV5	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.995
v1g118883	v1g200333	A7SHU0	A7RPW7	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.928
v1g118883	v1g205577	A7SHU0	A7S216	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.999
v1g118883	v1g209074	A7SHU0	A7SA20	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.984
v1g118883	v1g222887	A7SHU0	A7T670	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.984
v1g118883	v1g236602	A7SHU0	A7RSJ0	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.901
v1g118883	v1g237062	A7SHU0	A7SA71	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.902
v1g118883	v1g240928	A7SHU0	A7RV92	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.996
v1g118883	v1g241912	A7SHU0	A7S043	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.953
v1g118883	v1g246439	A7SHU0	A7SNS7	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Predicted protein.	0.460
v1g168328	v1g118883	A7SAE7	A7SHU0	Predicted protein.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.984
v1g168328	v1g195753	A7SAE7	A7T4E5	Predicted protein.	Predicted protein.	0.982
v1g168328	v1g198581	A7SAE7	A7RKV5	Predicted protein.	Predicted protein.	0.909
v1g168328	v1g200333	A7SAE7	A7RPW7	Predicted protein.	Predicted protein.	0.560
v1g168328	v1g205577	A7SAE7	A7S216	Predicted protein.	Predicted protein.	0.983
v1g168328	v1g209074	A7SAE7	A7SA20	Predicted protein.	Predicted protein.	0.556
v1g168328	v1g222887	A7SAE7	A7T670	Predicted protein.	Predicted protein.	0.946
v1g168328	v1g237062	A7SAE7	A7SA71	Predicted protein.	Predicted protein.	0.652