(42 nodes) Inositol phosphate metabolism, and Synthesis of PIPs at the late endosome membrane network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g77086	Predicted protein. (59 aa)
	v1g196982	Predicted protein. (404 aa)
	v1g81517	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (214 aa)
	v1g82921	Predicted protein. (235 aa)
	v1g197800	Predicted protein; Belongs to the histidine acid phosphatase family. (448 aa)
	v1g84394	Predicted protein. (113 aa)
	v1g84479	Predicted protein. (250 aa)
	v1g88290	Kinase; Belongs to the inositol phosphokinase (IPK) family. (291 aa)
	v1g89657	Predicted protein. (74 aa)
	v1g90881	Predicted protein; Belongs to the PI3/PI4-kinase family. (1310 aa)
	v1g240215	Predicted protein. (402 aa)
	v1g201207	Predicted protein. (2656 aa)
	v1g241000	Predicted protein. (610 aa)
	v1g174	Phosphoinositide phospholipase C. (746 aa)
	v1g164307	Predicted protein. (359 aa)
	v1g165173	Predicted protein; Belongs to the PI3/PI4-kinase family. (1683 aa)
	v1g242402	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1041 aa)
	v1g206862	Predicted protein. (2070 aa)
	v1g20426	Predicted protein. (551 aa)
	v1g109455	Predicted protein. (313 aa)
	v1g188264	Predicted protein. (442 aa)
	v1g116296	Predicted protein; Belongs to the histidine acid phosphatase family. (254 aa)
	v1g118891	Predicted protein. (591 aa)
	v1g170935	Inositol-tetrakisphosphate 1-kinase; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Belongs to the ITPK1 family. (352 aa)
	v1g237340	Predicted protein. (417 aa)
	v1g123184	Predicted protein. (398 aa)
	v1g124290	Phosphoinositide phospholipase C. (659 aa)
	v1g215928	Predicted protein. (1553 aa)
	v1g131389	Predicted protein. (338 aa)
	v1g174916	Predicted protein. (681 aa)
	v1g219446	Kinase; Belongs to the inositol phosphokinase (IPK) family. (294 aa)
	v1g175927	Predicted protein. (721 aa)
	v1g220765	Predicted protein. (136 aa)
	v1g220766	Predicted protein. (115 aa)
	v1g12143	Phosphoinositide phospholipase C. (337 aa)
	v1g146878	Predicted protein. (82 aa)
	v1g224214	Predicted protein. (165 aa)
	v1g224319	Predicted protein. (417 aa)
	v1g224712	Predicted protein. (167 aa)
	v1g224887	Predicted protein. (201 aa)
	v1g155018	Predicted protein. (184 aa)
	v1g49207	Predicted protein. (59 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g109455	v1g155018	A7S8Z5	A7TCL6	Predicted protein.	Predicted protein.	0.559
v1g109455	v1g175927	A7S8Z5	A7T069	Predicted protein.	Predicted protein.	0.832
v1g109455	v1g220765	A7S8Z5	A7T165	Predicted protein.	Predicted protein.	0.559
v1g109455	v1g220766	A7S8Z5	A7T166	Predicted protein.	Predicted protein.	0.559
v1g109455	v1g240215	A7S8Z5	A7RRN9	Predicted protein.	Predicted protein.	0.559
v1g109455	v1g49207	A7S8Z5	A7TCQ1	Predicted protein.	Predicted protein.	0.559
v1g109455	v1g84394	A7S8Z5	A7RK06	Predicted protein.	Predicted protein.	0.559
v1g116296	v1g12143	A7SFD5	A7T501	Predicted protein; Belongs to the histidine acid phosphatase family.	Phosphoinositide phospholipase C.	0.900
v1g116296	v1g124290	A7SFD5	A7SMY6	Predicted protein; Belongs to the histidine acid phosphatase family.	Phosphoinositide phospholipase C.	0.900
v1g116296	v1g170935	A7SFD5	A7SIB4	Predicted protein; Belongs to the histidine acid phosphatase family.	Inositol-tetrakisphosphate 1-kinase; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Belongs to the ITPK1 family.	0.901
v1g116296	v1g174	A7SFD5	A7RXP6	Predicted protein; Belongs to the histidine acid phosphatase family.	Phosphoinositide phospholipase C.	0.900
v1g116296	v1g196982	A7SFD5	A7RGY0	Predicted protein; Belongs to the histidine acid phosphatase family.	Predicted protein.	0.912
v1g116296	v1g197800	A7SFD5	A7RIX6	Predicted protein; Belongs to the histidine acid phosphatase family.	Predicted protein; Belongs to the histidine acid phosphatase family.	0.905
v1g116296	v1g219446	A7SFD5	A7SYC7	Predicted protein; Belongs to the histidine acid phosphatase family.	Kinase; Belongs to the inositol phosphokinase (IPK) family.	0.915
v1g116296	v1g88290	A7SFD5	A7RP53	Predicted protein; Belongs to the histidine acid phosphatase family.	Kinase; Belongs to the inositol phosphokinase (IPK) family.	0.911
v1g118891	v1g123184	A7SHY2	A7SM03	Predicted protein.	Predicted protein.	0.945
v1g118891	v1g124290	A7SHY2	A7SMY6	Predicted protein.	Phosphoinositide phospholipase C.	0.900
v1g118891	v1g131389	A7SHY2	A7STQ6	Predicted protein.	Predicted protein.	0.915
v1g118891	v1g155018	A7SHY2	A7TCL6	Predicted protein.	Predicted protein.	0.414
v1g118891	v1g164307	A7SHY2	A7RYV8	Predicted protein.	Predicted protein.	0.922