(36 nodes) Mixed, incl. Cadherin-like, and Cell-substrate junction assembly network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g238641	Predicted protein. (136 aa)
	v1g239679	Predicted protein. (207 aa)
	v1g56821	Predicted protein. (133 aa)
	v1g201944	Predicted protein. (203 aa)
	v1g96774	Predicted protein. (185 aa)
	v1g98014	Predicted protein. (351 aa)
	v1g99167	Predicted protein. (149 aa)
	v1g242003	Predicted protein. (378 aa)
	v1g185593	Predicted protein. (317 aa)
	v1g52838	Predicted protein. (257 aa)
	v1g108927	Predicted protein. (264 aa)
	v1g67148	Predicted protein. (104 aa)
	v1g117044	Predicted protein. (74 aa)
	v1g246347	Predicted protein. (157 aa)
	v1g126140	Predicted protein. (100 aa)
	v1g127187	Predicted protein. (119 aa)
	v1g18675	Predicted protein. (116 aa)
	v1g127202	Predicted protein. (91 aa)
	v1g134742	Predicted protein. (83 aa)
	v1g2043	Predicted protein. (206 aa)
	v1g16015	Predicted protein. (139 aa)
	v1g222388	Predicted protein. (156 aa)
	v1g146135	Predicted protein. (132 aa)
	v1g147113	Predicted protein. (50 aa)
	v1g148395	Predicted protein. (112 aa)
	v1g148827	Predicted protein. (228 aa)
	v1g223469	Predicted protein. (150 aa)
	v1g4597	Predicted protein. (175 aa)
	v1g151639	Predicted protein. (88 aa)
	v1g152131	Predicted protein. (72 aa)
	v1g152143	Predicted protein. (101 aa)
	v1g6703	Predicted protein. (125 aa)
	v1g154492	Predicted protein. (168 aa)
	v1g225510	Predicted protein. (155 aa)
	v1g225923	Predicted protein. (107 aa)
	v1g225928	Predicted protein. (102 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g126140	v1g134742	A7SPK8	A7SW25	Predicted protein.	Predicted protein.	0.484
v1g126140	v1g148395	A7SPK8	A7T6Z0	Predicted protein.	Predicted protein.	0.437
v1g126140	v1g148827	A7SPK8	A7T7G0	Predicted protein.	Predicted protein.	0.405
v1g126140	v1g152131	A7SPK8	A7TA86	Predicted protein.	Predicted protein.	0.506
v1g126140	v1g154492	A7SPK8	A7TC72	Predicted protein.	Predicted protein.	0.404
v1g126140	v1g185593	A7SPK8	A7S4L3	Predicted protein.	Predicted protein.	0.475
v1g126140	v1g18675	A7SPK8	A7SQA1	Predicted protein.	Predicted protein.	0.490
v1g126140	v1g225923	A7SPK8	A8DW72	Predicted protein.	Predicted protein.	0.459
v1g126140	v1g225928	A7SPK8	A8DW83	Predicted protein.	Predicted protein.	0.441
v1g126140	v1g238641	A7SPK8	A7RIY4	Predicted protein.	Predicted protein.	0.478
v1g126140	v1g239679	A7SPK8	A7RNZ6	Predicted protein.	Predicted protein.	0.410
v1g126140	v1g6703	A7SPK8	A7TAT6	Predicted protein.	Predicted protein.	0.401
v1g126140	v1g67148	A7SPK8	A7S9Y4	Predicted protein.	Predicted protein.	0.517
v1g126140	v1g96774	A7SPK8	A7RXJ0	Predicted protein.	Predicted protein.	0.457
v1g127187	v1g18675	A7SQA0	A7SQA1	Predicted protein.	Predicted protein.	0.448
v1g127187	v1g225928	A7SQA0	A8DW83	Predicted protein.	Predicted protein.	0.479
v1g127187	v1g238641	A7SQA0	A7RIY4	Predicted protein.	Predicted protein.	0.440
v1g127187	v1g4597	A7SQA0	A7T9P1	Predicted protein.	Predicted protein.	0.470
v1g127187	v1g67148	A7SQA0	A7S9Y4	Predicted protein.	Predicted protein.	0.438
v1g127202	v1g18675	A7SQA3	A7SQA1	Predicted protein.	Predicted protein.	0.440