(19 nodes) Mixed, incl. Major facilitator superfamily associated domain, and Cysteine transport network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g177762	Predicted protein. (470 aa)
	v1g86646	Predicted protein. (232 aa)
	v1g239663	Predicted protein. (509 aa)
	v1g161245	Predicted protein. (420 aa)
	v1g201119	Predicted protein. (450 aa)
	v1g97363	Predicted protein. (384 aa)
	v1g204788	Predicted protein. (529 aa)
	v1g243901	Predicted protein. (537 aa)
	v1g244203	Predicted protein. (474 aa)
	v1g117076	Predicted protein. (411 aa)
	v1g170793	Predicted protein. (262 aa)
	v1g172238	Predicted protein. (499 aa)
	v1g124913	Predicted protein. (676 aa)
	v1g246446	Predicted protein. (407 aa)
	v1g125342	Predicted protein. (403 aa)
	v1g247209	Predicted protein. (480 aa)
	v1g174383	Predicted protein. (370 aa)
	v1g176089	Predicted protein. (160 aa)
	v1g195662	Battenin. (439 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g117076	v1g172238	A7SG46	A7SMV0	Predicted protein.	Predicted protein.	0.420
v1g117076	v1g174383	A7SG46	A7SU87	Predicted protein.	Predicted protein.	0.549
v1g124913	v1g125342	A7SNJ0	A7SNU2	Predicted protein.	Predicted protein.	0.408
v1g124913	v1g246446	A7SNJ0	A7SNT9	Predicted protein.	Predicted protein.	0.408
v1g125342	v1g124913	A7SNU2	A7SNJ0	Predicted protein.	Predicted protein.	0.408
v1g125342	v1g161245	A7SNU2	A7RPG8	Predicted protein.	Predicted protein.	0.426
v1g125342	v1g172238	A7SNU2	A7SMV0	Predicted protein.	Predicted protein.	0.443
v1g125342	v1g174383	A7SNU2	A7SU87	Predicted protein.	Predicted protein.	0.554
v1g125342	v1g177762	A7SNU2	A7RGX9	Predicted protein.	Predicted protein.	0.596
v1g125342	v1g86646	A7SNU2	A7RLY7	Predicted protein.	Predicted protein.	0.541
v1g161245	v1g125342	A7RPG8	A7SNU2	Predicted protein.	Predicted protein.	0.426
v1g161245	v1g172238	A7RPG8	A7SMV0	Predicted protein.	Predicted protein.	0.639
v1g161245	v1g174383	A7RPG8	A7SU87	Predicted protein.	Predicted protein.	0.637
v1g161245	v1g177762	A7RPG8	A7RGX9	Predicted protein.	Predicted protein.	0.691
v1g161245	v1g243901	A7RPG8	A7SA53	Predicted protein.	Predicted protein.	0.616
v1g161245	v1g246446	A7RPG8	A7SNT9	Predicted protein.	Predicted protein.	0.426
v1g170793	v1g86646	A7SHV7	A7RLY7	Predicted protein.	Predicted protein.	0.565
v1g172238	v1g117076	A7SMV0	A7SG46	Predicted protein.	Predicted protein.	0.420
v1g172238	v1g125342	A7SMV0	A7SNU2	Predicted protein.	Predicted protein.	0.443
v1g172238	v1g161245	A7SMV0	A7RPG8	Predicted protein.	Predicted protein.	0.639