(32 nodes) Regulation of NF-kappa B signaling network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g82915	Predicted protein. (136 aa)
	v1g95908	Predicted protein. (375 aa)
	v1g103929	Predicted protein. (225 aa)
	v1g110560	Predicted protein. (97 aa)
	v1g111813	Predicted protein. (113 aa)
	v1g20671	Predicted protein. (293 aa)
	v1g115549	Predicted protein. (270 aa)
	v1g117959	Predicted protein. (92 aa)
	v1g24738	Predicted protein. (295 aa)
	v1g17103	Predicted protein. (165 aa)
	v1g123880	Predicted protein. (307 aa)
	v1g127051	Predicted protein. (143 aa)
	v1g1049	Predicted protein. (348 aa)
	v1g137492	Predicted protein. (378 aa)
	v1g137553	Predicted protein. (238 aa)
	v1g137514	Predicted protein. (185 aa)
	v1g137502	Predicted protein. (114 aa)
	v1g3606	Predicted protein. (220 aa)
	v1g137512	Predicted protein. (182 aa)
	v1g1167	Predicted protein. (238 aa)
	v1g231	Predicted protein. (376 aa)
	v1g137904	Predicted protein. (286 aa)
	v1g139465	Predicted protein. (408 aa)
	v1g220730	Predicted protein. (202 aa)
	v1g907	Predicted protein. (408 aa)
	v1g143617	Predicted protein. (104 aa)
	v1g145340	Predicted protein. (183 aa)
	v1g3074	Predicted protein. (219 aa)
	v1g195848	Predicted protein. (337 aa)
	v1g223763	Predicted protein. (215 aa)
	v1g4561	Predicted protein. (175 aa)
	v1g9525	Predicted protein. (140 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g103929	v1g115549	A7S461	A7SEM7	Predicted protein.	Predicted protein.	0.415
v1g111813	v1g143617	A7SB24	A7T2Y6	Predicted protein.	Predicted protein.	0.447
v1g111813	v1g4561	A7SB24	A7TAK2	Predicted protein.	Predicted protein.	0.420
v1g115549	v1g103929	A7SEM7	A7S461	Predicted protein.	Predicted protein.	0.415
v1g115549	v1g137512	A7SEM7	A7SY54	Predicted protein.	Predicted protein.	0.488
v1g1167	v1g127051	A7SY59	A7SQ34	Predicted protein.	Predicted protein.	0.476
v1g1167	v1g82915	A7SY59	A7RIQ8	Predicted protein.	Predicted protein.	0.435
v1g127051	v1g1167	A7SQ34	A7SY59	Predicted protein.	Predicted protein.	0.476
v1g127051	v1g137512	A7SQ34	A7SY54	Predicted protein.	Predicted protein.	0.439
v1g127051	v1g137553	A7SQ34	A7SY47	Predicted protein.	Predicted protein.	0.481
v1g127051	v1g137904	A7SQ34	A7SYH2	Predicted protein.	Predicted protein.	0.485
v1g127051	v1g139465	A7SQ34	A7SZT1	Predicted protein.	Predicted protein.	0.482
v1g127051	v1g17103	A7SQ34	A7SKB5	Predicted protein.	Predicted protein.	0.489
v1g127051	v1g95908	A7SQ34	A7RWG5	Predicted protein.	Predicted protein.	0.446
v1g137502	v1g137514	A7SY50	A7SY49	Predicted protein.	Predicted protein.	0.415
v1g137502	v1g82915	A7SY50	A7RIQ8	Predicted protein.	Predicted protein.	0.404
v1g137512	v1g115549	A7SY54	A7SEM7	Predicted protein.	Predicted protein.	0.488
v1g137512	v1g127051	A7SY54	A7SQ34	Predicted protein.	Predicted protein.	0.439
v1g137514	v1g137502	A7SY49	A7SY50	Predicted protein.	Predicted protein.	0.415
v1g137514	v1g223763	A7SY49	A7T8E6	Predicted protein.	Predicted protein.	0.497