(17 nodes) Mismatched DNA binding network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g82384	Predicted protein. (346 aa)
	v1g238590	Predicted protein. (889 aa)
	v1g199930	Predicted protein. (252 aa)
	v1g88316	Predicted protein. (337 aa)
	v1g167864	Predicted protein. (742 aa)
	v1g209026	Predicted protein. (433 aa)
	v1g76120	Predicted protein. (111 aa)
	v1g188431	Predicted protein. (792 aa)
	v1g214346	Predicted protein. (916 aa)
	v1g246770	Predicted protein. (775 aa)
	v1g12162	Predicted protein. (306 aa)
	v1g231142	Predicted protein. (786 aa)
	v1g223231	Predicted protein. (357 aa)
	v1g223521	Predicted protein. (111 aa)
	v1g224004	Predicted protein. (273 aa)
	v1g153129	Predicted protein. (61 aa)
	v1g3328	Predicted protein. (268 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g12162	v1g153129	A7SXI5	A7TB68	Predicted protein.	Predicted protein.	0.922
v1g12162	v1g167864	A7SXI5	A7S8W4	Predicted protein.	Predicted protein.	0.984
v1g12162	v1g188431	A7SXI5	A7SD83	Predicted protein.	Predicted protein.	0.958
v1g12162	v1g199930	A7SXI5	A7RP05	Predicted protein.	Predicted protein.	0.729
v1g12162	v1g209026	A7SXI5	A7S9X1	Predicted protein.	Predicted protein.	0.667
v1g12162	v1g214346	A7SXI5	A7SM04	Predicted protein.	Predicted protein.	0.766
v1g12162	v1g223231	A7SXI5	A7T736	Predicted protein.	Predicted protein.	0.922
v1g12162	v1g223521	A7SXI5	A7T7T9	Predicted protein.	Predicted protein.	0.705
v1g12162	v1g224004	A7SXI5	A7T909	Predicted protein.	Predicted protein.	0.958
v1g12162	v1g231142	A7SXI5	A7SXZ4	Predicted protein.	Predicted protein.	0.915
v1g12162	v1g238590	A7SXI5	A7RIQ7	Predicted protein.	Predicted protein.	0.586
v1g12162	v1g246770	A7SXI5	A7SQJ8	Predicted protein.	Predicted protein.	0.915
v1g12162	v1g3328	A7SXI5	A7TBU4	Predicted protein.	Predicted protein.	0.467
v1g12162	v1g76120	A7SXI5	A7S9X4	Predicted protein.	Predicted protein.	0.667
v1g12162	v1g82384	A7SXI5	A7RHM2	Predicted protein.	Predicted protein.	0.802
v1g12162	v1g88316	A7SXI5	A7RP06	Predicted protein.	Predicted protein.	0.729
v1g153129	v1g12162	A7TB68	A7SXI5	Predicted protein.	Predicted protein.	0.922
v1g153129	v1g167864	A7TB68	A7S8W4	Predicted protein.	Predicted protein.	0.992
v1g153129	v1g188431	A7TB68	A7SD83	Predicted protein.	Predicted protein.	0.981
v1g153129	v1g199930	A7TB68	A7RP05	Predicted protein.	Predicted protein.	0.878