(31 nodes) Mixed, incl. Protein neddylation, and Cullin, N-terminal network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g177584	Predicted protein. (384 aa)
	v1g178205	Predicted protein; Belongs to the cullin family. (746 aa)
	v1g82724	Predicted protein; Belongs to the cullin family. (222 aa)
	v1g228088	Predicted protein. (455 aa)
	v1g91173	Predicted protein. (378 aa)
	v1g92998	Predicted protein. (337 aa)
	v1g163012	Predicted protein; Belongs to the ubiquitin-conjugating enzyme family. (173 aa)
	v1g182319	NEDD8-activating enzyme E1 regulatory subunit. (534 aa)
	v1g164893	Predicted protein; Belongs to the SKP1 family. (162 aa)
	v1g103714	Predicted protein. (439 aa)
	v1g242923	Predicted protein. (1064 aa)
	v1g107861	Predicted protein. (415 aa)
	v1g167625	Predicted protein. (208 aa)
	v1g187015	Predicted protein. (366 aa)
	v1g169697	Predicted protein. (112 aa)
	v1g189228	Predicted protein; Belongs to the cullin family. (769 aa)
	v1g116912	Predicted protein. (115 aa)
	v1g119642	Predicted protein; Belongs to the cullin family. (122 aa)
	v1g171977	Predicted protein; Belongs to the ubiquitin-conjugating enzyme family. (181 aa)
	v1g191273	Predicted protein; Belongs to the cullin family. (694 aa)
	v1g128612	Predicted protein. (86 aa)
	v1g128552	Predicted protein. (924 aa)
	v1g173734	Predicted protein. (354 aa)
	v1g235880	Predicted protein. (354 aa)
	v1g131352	Predicted protein. (130 aa)
	v1g65453	Predicted protein. (127 aa)
	v1g144687	Predicted protein. (97 aa)
	v1g3345	Predicted protein; Belongs to the ubiquitin-conjugating enzyme family. (97 aa)
	v1g146990	Predicted protein. (87 aa)
	v1g149932	Predicted protein; Belongs to the cullin family. (70 aa)
	v1g149933	Predicted protein; Belongs to the cullin family. (122 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g103714	v1g107861	A7S3Z1	A7S7S6	Predicted protein.	Predicted protein.	0.468
v1g103714	v1g116912	A7S3Z1	A7SFY6	Predicted protein.	Predicted protein.	0.634
v1g103714	v1g119642	A7S3Z1	A7SIK9	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.681
v1g103714	v1g128552	A7S3Z1	A7SR99	Predicted protein.	Predicted protein.	0.442
v1g103714	v1g128612	A7S3Z1	A7SR98	Predicted protein.	Predicted protein.	0.442
v1g103714	v1g131352	A7S3Z1	A7STQ7	Predicted protein.	Predicted protein.	0.839
v1g103714	v1g144687	A7S3Z1	A7T3S1	Predicted protein.	Predicted protein.	0.831
v1g103714	v1g146990	A7S3Z1	A7T5Q4	Predicted protein.	Predicted protein.	0.723
v1g103714	v1g149932	A7S3Z1	A7T8A5	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.681
v1g103714	v1g149933	A7S3Z1	A7T8A7	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.681
v1g103714	v1g163012	A7S3Z1	A7RUX3	Predicted protein.	Predicted protein; Belongs to the ubiquitin-conjugating enzyme family.	0.933
v1g103714	v1g164893	A7S3Z1	A7S0E4	Predicted protein.	Predicted protein; Belongs to the SKP1 family.	0.854
v1g103714	v1g169697	A7S3Z1	A7SEK8	Predicted protein.	Predicted protein.	0.831
v1g103714	v1g171977	A7S3Z1	A7SLW2	Predicted protein.	Predicted protein; Belongs to the ubiquitin-conjugating enzyme family.	0.933
v1g103714	v1g173734	A7S3Z1	A7SS50	Predicted protein.	Predicted protein.	0.723
v1g103714	v1g178205	A7S3Z1	A7RI48	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.902
v1g103714	v1g182319	A7S3Z1	A7RV71	Predicted protein.	NEDD8-activating enzyme E1 regulatory subunit.	0.999
v1g103714	v1g189228	A7S3Z1	A7SFF7	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.891
v1g103714	v1g191273	A7S3Z1	A7SM65	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.681
v1g103714	v1g228088	A7S3Z1	A7RIJ5	Predicted protein.	Predicted protein.	0.746