(15 nodes) Mixed, incl. Cullin, and SCF complex assembly network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g178205	Predicted protein; Belongs to the cullin family. (746 aa)
	v1g228088	Predicted protein. (455 aa)
	v1g92998	Predicted protein. (337 aa)
	v1g164893	Predicted protein; Belongs to the SKP1 family. (162 aa)
	v1g242923	Predicted protein. (1064 aa)
	v1g107861	Predicted protein. (415 aa)
	v1g187015	Predicted protein. (366 aa)
	v1g169697	Predicted protein. (112 aa)
	v1g189228	Predicted protein; Belongs to the cullin family. (769 aa)
	v1g116912	Predicted protein. (115 aa)
	v1g119642	Predicted protein; Belongs to the cullin family. (122 aa)
	v1g128612	Predicted protein. (86 aa)
	v1g128552	Predicted protein. (924 aa)
	v1g144687	Predicted protein. (97 aa)
	v1g149932	Predicted protein; Belongs to the cullin family. (70 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g107861	v1g116912	A7S7S6	A7SFY6	Predicted protein.	Predicted protein.	0.968
v1g107861	v1g128552	A7S7S6	A7SR99	Predicted protein.	Predicted protein.	0.402
v1g107861	v1g128612	A7S7S6	A7SR98	Predicted protein.	Predicted protein.	0.402
v1g107861	v1g144687	A7S7S6	A7T3S1	Predicted protein.	Predicted protein.	0.949
v1g107861	v1g169697	A7S7S6	A7SEK8	Predicted protein.	Predicted protein.	0.949
v1g107861	v1g178205	A7S7S6	A7RI48	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.982
v1g107861	v1g189228	A7S7S6	A7SFF7	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.542
v1g116912	v1g107861	A7SFY6	A7S7S6	Predicted protein.	Predicted protein.	0.968
v1g116912	v1g119642	A7SFY6	A7SIK9	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.529
v1g116912	v1g128552	A7SFY6	A7SR99	Predicted protein.	Predicted protein.	0.780
v1g116912	v1g128612	A7SFY6	A7SR98	Predicted protein.	Predicted protein.	0.780
v1g116912	v1g144687	A7SFY6	A7T3S1	Predicted protein.	Predicted protein.	0.979
v1g116912	v1g149932	A7SFY6	A7T8A5	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.529
v1g116912	v1g164893	A7SFY6	A7S0E4	Predicted protein.	Predicted protein; Belongs to the SKP1 family.	0.788
v1g116912	v1g169697	A7SFY6	A7SEK8	Predicted protein.	Predicted protein.	0.979
v1g116912	v1g178205	A7SFY6	A7RI48	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.990
v1g116912	v1g189228	A7SFY6	A7SFF7	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.794
v1g116912	v1g92998	A7SFY6	A7RTZ4	Predicted protein.	Predicted protein.	0.755
v1g119642	v1g116912	A7SIK9	A7SFY6	Predicted protein; Belongs to the cullin family.	Predicted protein.	0.529
v1g119642	v1g128552	A7SIK9	A7SR99	Predicted protein; Belongs to the cullin family.	Predicted protein.	0.741