(20 nodes) Histone deacetylation, and Regulation of gene expression by genomic imprinting network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g83795	Predicted protein. (308 aa)
	v1g198999	Predicted protein. (387 aa)
	v1g239997	Predicted protein. (265 aa)
	v1g28133	Predicted protein. (128 aa)
	v1g240771	Predicted protein. (627 aa)
	v1g182323	Predicted protein. (399 aa)
	v1g241179	Predicted protein. (1071 aa)
	v1g232401	Inhibitor of growth protein. (261 aa)
	v1g104010	Predicted protein. (1161 aa)
	v1g186024	Predicted protein. (497 aa)
	v1g107990	Predicted protein. (325 aa)
	v1g111922	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (431 aa)
	v1g169376	Predicted protein. (137 aa)
	v1g114579	Predicted protein. (82 aa)
	v1g120884	Predicted protein. (172 aa)
	v1g190860	Predicted protein. (418 aa)
	v1g247517	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (384 aa)
	v1g5679	Predicted protein. (73 aa)
	v1g154458	Predicted protein. (152 aa)
	v1g225284	Predicted protein. (131 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g104010	v1g107990	A7S4D8	A7S7R6	Predicted protein.	Predicted protein.	0.980
v1g104010	v1g111922	A7S4D8	A7SB64	Predicted protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.924
v1g104010	v1g114579	A7S4D8	A7SDQ6	Predicted protein.	Predicted protein.	0.997
v1g104010	v1g120884	A7S4D8	A7SJW7	Predicted protein.	Predicted protein.	0.970
v1g104010	v1g154458	A7S4D8	A7TC65	Predicted protein.	Predicted protein.	0.729
v1g104010	v1g169376	A7S4D8	A7SDQ5	Predicted protein.	Predicted protein.	0.997
v1g104010	v1g182323	A7S4D8	A7RV72	Predicted protein.	Predicted protein.	0.996
v1g104010	v1g186024	A7S4D8	A7S5U0	Predicted protein.	Predicted protein.	0.683
v1g104010	v1g190860	A7S4D8	A7SKN6	Predicted protein.	Predicted protein.	0.775
v1g104010	v1g198999	A7S4D8	A7RLU4	Predicted protein.	Predicted protein.	0.961
v1g104010	v1g225284	A7S4D8	A7TCK7	Predicted protein.	Predicted protein.	0.924
v1g104010	v1g232401	A7S4D8	A7RXJ4	Predicted protein.	Inhibitor of growth protein.	0.954
v1g104010	v1g239997	A7S4D8	A7RQL5	Predicted protein.	Predicted protein.	0.775
v1g104010	v1g240771	A7S4D8	A7RUE3	Predicted protein.	Predicted protein.	0.530
v1g104010	v1g241179	A7S4D8	A7RWI3	Predicted protein.	Predicted protein.	0.994
v1g104010	v1g247517	A7S4D8	A7SUP8	Predicted protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.924
v1g104010	v1g28133	A7S4D8	A7RT90	Predicted protein.	Predicted protein.	0.763
v1g104010	v1g5679	A7S4D8	A7T651	Predicted protein.	Predicted protein.	0.775
v1g104010	v1g83795	A7S4D8	A7RJK5	Predicted protein.	Predicted protein.	0.729
v1g107990	v1g104010	A7S7R6	A7S4D8	Predicted protein.	Predicted protein.	0.980