10 items (Nematostella vectensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g238228	Predicted protein. (542 aa)
	v1g180316	Predicted protein. (735 aa)
	v1g241252	Predicted protein. (306 aa)
	v1g101079	General transcription factor IIH subunit. (400 aa)
	v1g167568	Predicted protein; Belongs to the cyclin family. (306 aa)
	v1g244165	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (471 aa)
	v1g115691	Predicted protein. (421 aa)
	v1g245039	Predicted protein. (190 aa)
	v1g175862	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (288 aa)
	v1g155676	Predicted protein. (109 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g101079	v1g115691	A7S1M7	A7SES2	General transcription factor IIH subunit.	Predicted protein.	0.966
v1g101079	v1g155676	A7S1M7	A8DVA7	General transcription factor IIH subunit.	Predicted protein.	0.963
v1g101079	v1g167568	A7S1M7	A7S801	General transcription factor IIH subunit.	Predicted protein; Belongs to the cyclin family.	0.987
v1g101079	v1g175862	A7S1M7	A7SZU7	General transcription factor IIH subunit.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.966
v1g101079	v1g180316	A7S1M7	A7RNX6	General transcription factor IIH subunit.	Predicted protein.	0.978
v1g101079	v1g238228	A7S1M7	A7RH50	General transcription factor IIH subunit.	Predicted protein.	0.989
v1g101079	v1g241252	A7S1M7	A7RWZ3	General transcription factor IIH subunit.	Predicted protein.	0.989
v1g101079	v1g244165	A7S1M7	A7SBP9	General transcription factor IIH subunit.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.989
v1g101079	v1g245039	A7S1M7	A7SG25	General transcription factor IIH subunit.	Predicted protein.	0.989
v1g115691	v1g101079	A7SES2	A7S1M7	Predicted protein.	General transcription factor IIH subunit.	0.966
v1g115691	v1g155676	A7SES2	A8DVA7	Predicted protein.	Predicted protein.	0.975
v1g115691	v1g167568	A7SES2	A7S801	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.995
v1g115691	v1g175862	A7SES2	A7SZU7	Predicted protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.999
v1g115691	v1g180316	A7SES2	A7RNX6	Predicted protein.	Predicted protein.	0.997
v1g115691	v1g238228	A7SES2	A7RH50	Predicted protein.	Predicted protein.	0.998
v1g115691	v1g241252	A7SES2	A7RWZ3	Predicted protein.	Predicted protein.	0.997
v1g115691	v1g244165	A7SES2	A7SBP9	Predicted protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.998
v1g115691	v1g245039	A7SES2	A7SG25	Predicted protein.	Predicted protein.	0.996
v1g155676	v1g101079	A8DVA7	A7S1M7	Predicted protein.	General transcription factor IIH subunit.	0.963
v1g155676	v1g115691	A8DVA7	A7SES2	Predicted protein.	Predicted protein.	0.975