(19 nodes) Transcription factor TFIID complex network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g178700	Predicted protein. (931 aa)
	v1g90512	Predicted protein. (160 aa)
	v1g162513	Predicted protein. (662 aa)
	v1g240727	Predicted protein. (255 aa)
	v1g93714	Predicted protein. (116 aa)
	v1g164541	Predicted protein. (511 aa)
	v1g166645	Predicted protein. (124 aa)
	v1g212490	Predicted protein. (969 aa)
	v1g246040	Predicted protein. (255 aa)
	v1g130839	Predicted protein. (599 aa)
	v1g217267	Predicted protein. (174 aa)
	v1g10142	Predicted protein. (997 aa)
	v1g133899	Predicted protein. (130 aa)
	v1g138459	Predicted protein. (108 aa)
	v1g139976	Predicted protein. (106 aa)
	v1g145097	Predicted protein. (216 aa)
	v1g7672	Predicted protein. (121 aa)
	v1g224761	Predicted protein. (218 aa)
	v1g225715	Predicted protein. (135 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g10142	v1g130839	A7STW0	A7ST98	Predicted protein.	Predicted protein.	0.940
v1g10142	v1g133899	A7STW0	A7SVA3	Predicted protein.	Predicted protein.	0.938
v1g10142	v1g138459	A7STW0	A7SYY0	Predicted protein.	Predicted protein.	0.989
v1g10142	v1g139976	A7STW0	A7T062	Predicted protein.	Predicted protein.	0.963
v1g10142	v1g145097	A7STW0	A7T426	Predicted protein.	Predicted protein.	0.940
v1g10142	v1g162513	A7STW0	A7RTJ4	Predicted protein.	Predicted protein.	0.989
v1g10142	v1g164541	A7STW0	A7RZJ8	Predicted protein.	Predicted protein.	0.940
v1g10142	v1g166645	A7STW0	A7S5E5	Predicted protein.	Predicted protein.	0.989
v1g10142	v1g178700	A7STW0	A7RJC0	Predicted protein.	Predicted protein.	0.946
v1g10142	v1g212490	A7STW0	A7SHT6	Predicted protein.	Predicted protein.	0.989
v1g10142	v1g217267	A7STW0	A7STJ2	Predicted protein.	Predicted protein.	0.946
v1g10142	v1g224761	A7STW0	A7TB73	Predicted protein.	Predicted protein.	0.543
v1g10142	v1g225715	A7STW0	A8DVI6	Predicted protein.	Predicted protein.	0.940
v1g10142	v1g240727	A7STW0	A7RU65	Predicted protein.	Predicted protein.	0.974
v1g10142	v1g246040	A7STW0	A7SLJ3	Predicted protein.	Predicted protein.	0.989
v1g10142	v1g7672	A7STW0	A7T6V4	Predicted protein.	Predicted protein.	0.938
v1g10142	v1g90512	A7STW0	A7RR68	Predicted protein.	Predicted protein.	0.989
v1g10142	v1g93714	A7STW0	A7RU94	Predicted protein.	Predicted protein.	0.989
v1g130839	v1g10142	A7ST98	A7STW0	Predicted protein.	Predicted protein.	0.940
v1g130839	v1g133899	A7ST98	A7SVA3	Predicted protein.	Predicted protein.	0.884