(7 nodes) Mixed, incl. cyclin/CDK positive transcription elongation factor complex, and YEATS family network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g83332	Predicted protein; Belongs to the cyclin family. (201 aa)
	v1g228551	Predicted protein. (304 aa)
	v1g91924	Predicted protein. (153 aa)
	v1g99661	Predicted protein; Belongs to the cyclin family. (255 aa)
	v1g246363	Predicted protein; Belongs to the protein kinase superfamily. (370 aa)
	v1g130552	Predicted protein; Belongs to the protein kinase superfamily. (337 aa)
	v1g219570	Predicted protein. (516 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g130552	v1g228551	A7ST16	A7RQW1	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.777
v1g130552	v1g246363	A7ST16	A7SNE8	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein; Belongs to the protein kinase superfamily.	0.665
v1g130552	v1g83332	A7ST16	A7RIW0	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein; Belongs to the cyclin family.	0.855
v1g130552	v1g99661	A7ST16	A7S058	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein; Belongs to the cyclin family.	0.830
v1g219570	v1g228551	A7SYM2	A7RQW1	Predicted protein.	Predicted protein.	0.772
v1g219570	v1g246363	A7SYM2	A7SNE8	Predicted protein.	Predicted protein; Belongs to the protein kinase superfamily.	0.921
v1g219570	v1g83332	A7SYM2	A7RIW0	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.890
v1g219570	v1g91924	A7SYM2	A7RSI6	Predicted protein.	Predicted protein.	0.928
v1g219570	v1g99661	A7SYM2	A7S058	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.957
v1g228551	v1g130552	A7RQW1	A7ST16	Predicted protein.	Predicted protein; Belongs to the protein kinase superfamily.	0.777
v1g228551	v1g219570	A7RQW1	A7SYM2	Predicted protein.	Predicted protein.	0.772
v1g228551	v1g246363	A7RQW1	A7SNE8	Predicted protein.	Predicted protein; Belongs to the protein kinase superfamily.	0.615
v1g228551	v1g83332	A7RQW1	A7RIW0	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.982
v1g228551	v1g99661	A7RQW1	A7S058	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.933
v1g246363	v1g130552	A7SNE8	A7ST16	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein; Belongs to the protein kinase superfamily.	0.665
v1g246363	v1g219570	A7SNE8	A7SYM2	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.921
v1g246363	v1g228551	A7SNE8	A7RQW1	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.615
v1g246363	v1g83332	A7SNE8	A7RIW0	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein; Belongs to the cyclin family.	0.969
v1g246363	v1g91924	A7SNE8	A7RSI6	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.925
v1g246363	v1g99661	A7SNE8	A7S058	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein; Belongs to the cyclin family.	0.992