(23 nodes) GPN-loop GTPase, and RNA polymerase core enzyme binding network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g83376	Predicted protein. (1151 aa)
	v1g84933	Predicted protein. (798 aa)
	v1g239626	Predicted protein. (175 aa)
	v1g240218	Predicted protein. (448 aa)
	v1g240625	Predicted protein. (510 aa)
	v1g162906	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import. (373 aa)
	v1g203150	Predicted protein. (641 aa)
	v1g203151	Predicted protein. (171 aa)
	v1g106870	Predicted protein. (367 aa)
	v1g12519	Predicted protein. (253 aa)
	v1g137669	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family. (271 aa)
	v1g137909	Predicted protein. (201 aa)
	v1g233725	Predicted protein. (370 aa)
	v1g248113	Predicted protein. (1300 aa)
	v1g194926	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family. (300 aa)
	v1g143699	Predicted protein. (356 aa)
	v1g221590	Predicted protein. (149 aa)
	v1g223993	Predicted protein. (476 aa)
	v1g5663	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import. (154 aa)
	v1g224097	Predicted protein. (145 aa)
	v1g224178	Predicted protein. (115 aa)
	v1g224359	Predicted protein. (211 aa)
	v1g225255	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import. (280 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g106870	v1g143699	A7S712	A7T2Z4	Predicted protein.	Predicted protein.	0.600
v1g106870	v1g203150	A7S712	A7RWF1	Predicted protein.	Predicted protein.	0.529
v1g106870	v1g203151	A7S712	A7RWF2	Predicted protein.	Predicted protein.	0.529
v1g106870	v1g221590	A7S712	A7T2Z5	Predicted protein.	Predicted protein.	0.600
v1g106870	v1g223993	A7S712	A7T900	Predicted protein.	Predicted protein.	0.529
v1g106870	v1g248113	A7S712	A7SYN2	Predicted protein.	Predicted protein.	0.611
v1g12519	v1g225255	A7SR21	A7TCI4	Predicted protein.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.473
v1g12519	v1g5663	A7SR21	A7T927	Predicted protein.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.624
v1g12519	v1g84933	A7SR21	A7RKV2	Predicted protein.	Predicted protein.	0.807
v1g137669	v1g162906	A7SY87	A7RUM5	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.848
v1g137669	v1g194926	A7SY87	A7SZ76	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.728
v1g137669	v1g203150	A7SY87	A7RWF1	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Predicted protein.	0.692
v1g137669	v1g203151	A7SY87	A7RWF2	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Predicted protein.	0.692
v1g137669	v1g223993	A7SY87	A7T900	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Predicted protein.	0.692
v1g137669	v1g225255	A7SY87	A7TCI4	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.848
v1g137669	v1g5663	A7SY87	A7T927	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.848
v1g137669	v1g83376	A7SY87	A7RJ67	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Predicted protein.	0.689
v1g137909	v1g143699	A7SYH5	A7T2Z4	Predicted protein.	Predicted protein.	0.600
v1g137909	v1g203150	A7SYH5	A7RWF1	Predicted protein.	Predicted protein.	0.529
v1g137909	v1g203151	A7SYH5	A7RWF2	Predicted protein.	Predicted protein.	0.529