(16 nodes) Mixed, incl. pre-snoRNP complex, and ASTRA complex network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g94851	Predicted protein. (322 aa)
	v1g61396	Predicted protein. (290 aa)
	v1g109335	Predicted protein. (778 aa)
	v1g245187	Predicted protein. (135 aa)
	v1g27358	Predicted protein. (227 aa)
	v1g215973	Predicted protein. (185 aa)
	v1g247274	Predicted protein. (163 aa)
	v1g133953	Predicted protein. (1078 aa)
	v1g247702	Predicted protein. (176 aa)
	v1g248235	Predicted protein. (401 aa)
	v1g195059	Predicted protein. (355 aa)
	v1g220540	Predicted protein. (216 aa)
	v1g176010	Predicted protein. (270 aa)
	v1g140887	Protein UXT homolog; Belongs to the UXT family. (159 aa)
	v1g223176	Predicted protein. (213 aa)
	v1g226087	Predicted protein. (126 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g109335	v1g133953	A7S910	A7SVB4	Predicted protein.	Predicted protein.	0.994
v1g109335	v1g223176	A7S910	A7T6X4	Predicted protein.	Predicted protein.	0.974
v1g109335	v1g226087	A7S910	A8DWS7	Predicted protein.	Predicted protein.	0.481
v1g109335	v1g61396	A7S910	A7RZC7	Predicted protein.	Predicted protein.	0.481
v1g109335	v1g94851	A7S910	A7RV82	Predicted protein.	Predicted protein.	0.673
v1g133953	v1g109335	A7SVB4	A7S910	Predicted protein.	Predicted protein.	0.994
v1g133953	v1g223176	A7SVB4	A7T6X4	Predicted protein.	Predicted protein.	0.546
v1g133953	v1g226087	A7SVB4	A8DWS7	Predicted protein.	Predicted protein.	0.464
v1g133953	v1g247274	A7SVB4	A7STA1	Predicted protein.	Predicted protein.	0.588
v1g133953	v1g61396	A7SVB4	A7RZC7	Predicted protein.	Predicted protein.	0.464
v1g133953	v1g94851	A7SVB4	A7RV82	Predicted protein.	Predicted protein.	0.654
v1g140887	v1g176010	A7T0W1	A7T0P9	Protein UXT homolog; Belongs to the UXT family.	Predicted protein.	0.653
v1g140887	v1g195059	A7T0W1	A7SZU3	Protein UXT homolog; Belongs to the UXT family.	Predicted protein.	0.900
v1g140887	v1g215973	A7T0W1	A7SQU2	Protein UXT homolog; Belongs to the UXT family.	Predicted protein.	0.919
v1g140887	v1g220540	A7T0W1	A7T0P8	Protein UXT homolog; Belongs to the UXT family.	Predicted protein.	0.653
v1g140887	v1g226087	A7T0W1	A8DWS7	Protein UXT homolog; Belongs to the UXT family.	Predicted protein.	0.665
v1g140887	v1g245187	A7T0W1	A7SGT5	Protein UXT homolog; Belongs to the UXT family.	Predicted protein.	0.868
v1g140887	v1g27358	A7T0W1	A7SN44	Protein UXT homolog; Belongs to the UXT family.	Predicted protein.	0.653
v1g140887	v1g61396	A7T0W1	A7RZC7	Protein UXT homolog; Belongs to the UXT family.	Predicted protein.	0.665
v1g176010	v1g140887	A7T0P9	A7T0W1	Predicted protein.	Protein UXT homolog; Belongs to the UXT family.	0.653