(16 nodes) Resolution of meiotic recombination intermediates network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g133840	Predicted protein. (642 aa)
	v1g162970	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (516 aa)
	v1g94213	Predicted protein. (114 aa)
	v1g94148	Predicted protein. (394 aa)
	v1g240773	Predicted protein. (1046 aa)
	v1g247824	Predicted protein. (560 aa)
	v1g247825	Predicted protein. (633 aa)
	v1g144180	Predicted protein. (170 aa)
	v1g168557	Predicted protein. (899 aa)
	v1g225783	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (281 aa)
	v1g209811	Predicted protein. (697 aa)
	v1g168786	Predicted protein. (125 aa)
	v1g188006	Predicted protein. (183 aa)
	v1g210850	Predicted protein. (866 aa)
	v1g124403	Predicted protein. (465 aa)
	v1g216292	Predicted protein. (2466 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g124403	v1g133840	A7SN39	A7SV86	Predicted protein.	Predicted protein.	0.637
v1g124403	v1g209811	A7SN39	A7SBQ5	Predicted protein.	Predicted protein.	0.621
v1g124403	v1g210850	A7SN39	A7SE42	Predicted protein.	Predicted protein.	0.638
v1g124403	v1g216292	A7SN39	A7SRG9	Predicted protein.	Predicted protein.	0.521
v1g133840	v1g124403	A7SV86	A7SN39	Predicted protein.	Predicted protein.	0.637
v1g133840	v1g144180	A7SV86	A7T3B9	Predicted protein.	Predicted protein.	0.435
v1g133840	v1g162970	A7SV86	A7RUU5	Predicted protein.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.435
v1g133840	v1g168557	A7SV86	A7SB73	Predicted protein.	Predicted protein.	0.815
v1g133840	v1g209811	A7SV86	A7SBQ5	Predicted protein.	Predicted protein.	0.724
v1g133840	v1g210850	A7SV86	A7SE42	Predicted protein.	Predicted protein.	0.998
v1g133840	v1g225783	A7SV86	A8DVR1	Predicted protein.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.435
v1g133840	v1g240773	A7SV86	A7RUE5	Predicted protein.	Predicted protein.	0.673
v1g133840	v1g247824	A7SV86	A7SWK8	Predicted protein.	Predicted protein.	0.997
v1g133840	v1g247825	A7SV86	A7SWL0	Predicted protein.	Predicted protein.	0.997
v1g133840	v1g94148	A7SV86	A7RUU3	Predicted protein.	Predicted protein.	0.435
v1g133840	v1g94213	A7SV86	A7RUU4	Predicted protein.	Predicted protein.	0.435
v1g144180	v1g133840	A7T3B9	A7SV86	Predicted protein.	Predicted protein.	0.435
v1g144180	v1g162970	A7T3B9	A7RUU5	Predicted protein.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.946
v1g144180	v1g94148	A7T3B9	A7RUU3	Predicted protein.	Predicted protein.	0.949
v1g144180	v1g94213	A7T3B9	A7RUU4	Predicted protein.	Predicted protein.	0.924