(26 nodes) Ruffle network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g159935	Predicted protein. (2506 aa)
	v1g79564	Predicted protein. (109 aa)
	v1g197314	Predicted protein. (220 aa)
	v1g239114	Predicted protein. (980 aa)
	v1g202473	Predicted protein. (1903 aa)
	v1g164111	Predicted protein. (313 aa)
	v1g98111	Predicted protein. (115 aa)
	v1g164307	Predicted protein. (359 aa)
	v1g98259	Predicted protein. (65 aa)
	v1g242096	Predicted protein. (280 aa)
	v1g206034	Predicted protein. (118 aa)
	v1g242616	Predicted protein. (1332 aa)
	v1g103669	Predicted protein. (106 aa)
	v1g103663	Phosphoinositide phospholipase C. (200 aa)
	v1g166872	Predicted protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	v1g236955	Predicted protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	v1g50340	Predicted protein. (385 aa)
	v1g190378	Predicted protein. (681 aa)
	v1g124290	Phosphoinositide phospholipase C. (659 aa)
	v1g124667	Predicted protein. (336 aa)
	v1g135676	Predicted protein. (460 aa)
	v1g222155	Predicted protein. (547 aa)
	v1g248701	Predicted protein. (492 aa)
	v1g145887	Predicted protein. (106 aa)
	v1g223439	Predicted protein. (241 aa)
	v1g224666	Predicted protein. (450 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g103663	v1g124290	A7S421	A7SMY6	Phosphoinositide phospholipase C.	Phosphoinositide phospholipase C.	0.917
v1g124290	v1g103663	A7SMY6	A7S421	Phosphoinositide phospholipase C.	Phosphoinositide phospholipase C.	0.917
v1g124290	v1g164307	A7SMY6	A7RYV8	Phosphoinositide phospholipase C.	Predicted protein.	0.910
v1g124667	v1g166872	A7SN91	A7S615	Predicted protein.	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	0.647
v1g124667	v1g236955	A7SN91	A7S616	Predicted protein.	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	0.647
v1g135676	v1g242096	A7SWS6	A7S124	Predicted protein.	Predicted protein.	0.948
v1g164307	v1g124290	A7RYV8	A7SMY6	Predicted protein.	Phosphoinositide phospholipase C.	0.910
v1g166872	v1g124667	A7S615	A7SN91	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	Predicted protein.	0.647
v1g166872	v1g190378	A7S615	A7SJB4	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	Predicted protein.	0.439
v1g166872	v1g236955	A7S615	A7S616	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	0.900
v1g190378	v1g166872	A7SJB4	A7S615	Predicted protein.	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	0.439
v1g190378	v1g236955	A7SJB4	A7S616	Predicted protein.	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	0.439
v1g236955	v1g124667	A7S616	A7SN91	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	Predicted protein.	0.647
v1g236955	v1g166872	A7S616	A7S615	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	0.900
v1g236955	v1g190378	A7S616	A7SJB4	Predicted protein; Belongs to the small GTPase superfamily. Arf family.	Predicted protein.	0.439
v1g242096	v1g135676	A7S124	A7SWS6	Predicted protein.	Predicted protein.	0.948