26 items (Nematostella vectensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g154682	Predicted protein. (70 aa)
	v1g197530	Predicted protein. (271 aa)
	v1g84933	Predicted protein. (798 aa)
	v1g85536	Predicted protein. (940 aa)
	v1g85927	Predicted protein. (418 aa)
	v1g239374	Predicted protein. (386 aa)
	v1g232160	Protein AKTIP homolog; Belongs to the ubiquitin-conjugating enzyme family. FTS subfamily. (297 aa)
	v1g181611	Predicted protein. (205 aa)
	v1g95934	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family. (589 aa)
	v1g96025	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family. (547 aa)
	v1g183227	Predicted protein; Belongs to the synaptobrevin family. (218 aa)
	v1g184615	Predicted protein. (870 aa)
	v1g103789	Predicted protein. (190 aa)
	v1g103563	Predicted protein. (165 aa)
	v1g244032	Predicted protein. (431 aa)
	v1g209600	Sortilin. (1176 aa)
	v1g209672	Predicted protein; Belongs to the synaptobrevin family. (223 aa)
	v1g229912	Predicted protein. (235 aa)
	v1g114236	Predicted protein. (151 aa)
	v1g114271	Predicted protein. (719 aa)
	v1g169554	Predicted protein. (389 aa)
	v1g245460	Predicted protein. (471 aa)
	v1g124913	Predicted protein. (676 aa)
	v1g215046	Predicted protein. (123 aa)
	v1g222366	Predicted protein. (272 aa)
	v1g225185	Predicted protein. (120 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g114236	v1g114271	A7SDI9	A7SDJ0	Predicted protein.	Predicted protein.	0.555
v1g114236	v1g183227	A7SDI9	A7RXX6	Predicted protein.	Predicted protein; Belongs to the synaptobrevin family.	0.444
v1g114236	v1g209672	A7SDI9	A7SBE8	Predicted protein.	Predicted protein; Belongs to the synaptobrevin family.	0.509
v1g114236	v1g215046	A7SDI9	A7SNP8	Predicted protein.	Predicted protein.	0.406
v1g114271	v1g114236	A7SDJ0	A7SDI9	Predicted protein.	Predicted protein.	0.555
v1g114271	v1g183227	A7SDJ0	A7RXX6	Predicted protein.	Predicted protein; Belongs to the synaptobrevin family.	0.444
v1g114271	v1g209672	A7SDJ0	A7SBE8	Predicted protein.	Predicted protein; Belongs to the synaptobrevin family.	0.509
v1g114271	v1g215046	A7SDJ0	A7SNP8	Predicted protein.	Predicted protein.	0.406
v1g154682	v1g225185	A7TCC8	A7TCC7	Predicted protein.	Predicted protein.	0.442
v1g183227	v1g114236	A7RXX6	A7SDI9	Predicted protein; Belongs to the synaptobrevin family.	Predicted protein.	0.444
v1g183227	v1g114271	A7RXX6	A7SDJ0	Predicted protein; Belongs to the synaptobrevin family.	Predicted protein.	0.444
v1g183227	v1g209672	A7RXX6	A7SBE8	Predicted protein; Belongs to the synaptobrevin family.	Predicted protein; Belongs to the synaptobrevin family.	0.904
v1g183227	v1g215046	A7RXX6	A7SNP8	Predicted protein; Belongs to the synaptobrevin family.	Predicted protein.	0.571
v1g183227	v1g85536	A7RXX6	A7RKZ9	Predicted protein; Belongs to the synaptobrevin family.	Predicted protein.	0.450
v1g183227	v1g95934	A7RXX6	A7RWL2	Predicted protein; Belongs to the synaptobrevin family.	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family.	0.587
v1g183227	v1g96025	A7RXX6	A7RWL4	Predicted protein; Belongs to the synaptobrevin family.	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family.	0.587
v1g184615	v1g85536	A7S1S5	A7RKZ9	Predicted protein.	Predicted protein.	0.996
v1g184615	v1g95934	A7S1S5	A7RWL2	Predicted protein.	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family.	0.879
v1g184615	v1g96025	A7S1S5	A7RWL4	Predicted protein.	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family.	0.879
v1g209600	v1g215046	A7SB80	A7SNP8	Sortilin.	Predicted protein.	0.594