(18 nodes) Post-transcriptional gene silencing network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g77702	Predicted protein. (50 aa)
	v1g151444	Predicted protein. (227 aa)
	v1g223093	Predicted protein. (199 aa)
	v1g144913	Predicted protein. (110 aa)
	v1g191975	Predicted protein. (559 aa)
	v1g122070	Predicted protein. (199 aa)
	v1g18728	Predicted protein. (111 aa)
	v1g119416	Predicted protein. (261 aa)
	v1g244574	Predicted protein. (1727 aa)
	v1g113260	Predicted protein. (68 aa)
	v1g30450	Predicted protein; Belongs to the argonaute family. (743 aa)
	v1g167719	Predicted protein; Belongs to the DEAD box helicase family. (432 aa)
	v1g241809	Predicted protein. (1254 aa)
	v1g202972	Predicted protein. (994 aa)
	v1g93294	Predicted protein. (448 aa)
	v1g201449	Predicted protein. (332 aa)
	v1g180719	Predicted protein; Belongs to the argonaute family. (854 aa)
	v1g84031	Predicted protein. (237 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g113260	v1g119416	A7SCI7	A7SIA4	Predicted protein.	Predicted protein.	0.715
v1g113260	v1g122070	A7SCI7	A7SKX2	Predicted protein.	Predicted protein.	0.715
v1g113260	v1g167719	A7SCI7	A7S8H2	Predicted protein.	Predicted protein; Belongs to the DEAD box helicase family.	0.631
v1g113260	v1g201449	A7SCI7	A7RSG7	Predicted protein.	Predicted protein.	0.715
v1g113260	v1g223093	A7SCI7	A7T6Q0	Predicted protein.	Predicted protein.	0.806
v1g113260	v1g244574	A7SCI7	A7SDW4	Predicted protein.	Predicted protein.	0.806
v1g113260	v1g77702	A7SCI7	A7SKX4	Predicted protein.	Predicted protein.	0.715
v1g119416	v1g113260	A7SIA4	A7SCI7	Predicted protein.	Predicted protein.	0.715
v1g119416	v1g180719	A7SIA4	A7RQ46	Predicted protein.	Predicted protein; Belongs to the argonaute family.	0.715
v1g119416	v1g202972	A7SIA4	A7RW05	Predicted protein.	Predicted protein.	0.619
v1g119416	v1g30450	A7SIA4	A7SCI6	Predicted protein.	Predicted protein; Belongs to the argonaute family.	0.715
v1g122070	v1g113260	A7SKX2	A7SCI7	Predicted protein.	Predicted protein.	0.715
v1g122070	v1g180719	A7SKX2	A7RQ46	Predicted protein.	Predicted protein; Belongs to the argonaute family.	0.715
v1g122070	v1g202972	A7SKX2	A7RW05	Predicted protein.	Predicted protein.	0.619
v1g122070	v1g30450	A7SKX2	A7SCI6	Predicted protein.	Predicted protein; Belongs to the argonaute family.	0.715
v1g144913	v1g18728	A7T3X5	A7SKU4	Predicted protein.	Predicted protein.	0.551
v1g167719	v1g113260	A7S8H2	A7SCI7	Predicted protein; Belongs to the DEAD box helicase family.	Predicted protein.	0.631
v1g167719	v1g180719	A7S8H2	A7RQ46	Predicted protein; Belongs to the DEAD box helicase family.	Predicted protein; Belongs to the argonaute family.	0.631
v1g167719	v1g202972	A7S8H2	A7RW05	Predicted protein; Belongs to the DEAD box helicase family.	Predicted protein.	0.539
v1g167719	v1g223093	A7S8H2	A7T6Q0	Predicted protein; Belongs to the DEAD box helicase family.	Predicted protein.	0.422