19 items (Nematostella vectensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g147404	Predicted protein. (522 aa)
	v1g145718	Predicted protein. (232 aa)
	v1g139976	Predicted protein. (106 aa)
	v1g217267	Predicted protein. (174 aa)
	v1g128552	Predicted protein. (924 aa)
	v1g128612	Predicted protein. (86 aa)
	v1g245474	Predicted protein. (776 aa)
	v1g118178	Predicted protein. (310 aa)
	v1g114480	Predicted protein. (114 aa)
	v1g197956	Predicted protein. (193 aa)
	v1g178700	Predicted protein. (931 aa)
	v1g67237	Predicted protein. (101 aa)
	v1g240343	Predicted protein. (674 aa)
	v1g241356	Predicted protein. (231 aa)
	v1g47437	Predicted protein. (93 aa)
	v1g169387	Predicted protein. (146 aa)
	v1g114817	Predicted protein. (221 aa)
	v1g169525	Predicted protein. (1872 aa)
	v1g146211	Predicted protein. (57 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g114480	v1g118178	A7SDS2	A7SH79	Predicted protein.	Predicted protein.	0.715
v1g114480	v1g147404	A7SDS2	A7T629	Predicted protein.	Predicted protein.	0.542
v1g114480	v1g169387	A7SDS2	A7SDS0	Predicted protein.	Predicted protein.	0.586
v1g114480	v1g240343	A7SDS2	A7RS80	Predicted protein.	Predicted protein.	0.634
v1g114817	v1g118178	A7SE45	A7SH79	Predicted protein.	Predicted protein.	0.468
v1g114817	v1g145718	A7SE45	A7T4M1	Predicted protein.	Predicted protein.	0.900
v1g114817	v1g241356	A7SE45	A7RXF9	Predicted protein.	Predicted protein.	0.787
v1g114817	v1g47437	A7SE45	A7S4W7	Predicted protein.	Predicted protein.	0.788
v1g118178	v1g114480	A7SH79	A7SDS2	Predicted protein.	Predicted protein.	0.715
v1g118178	v1g114817	A7SH79	A7SE45	Predicted protein.	Predicted protein.	0.468
v1g118178	v1g139976	A7SH79	A7T062	Predicted protein.	Predicted protein.	0.904
v1g118178	v1g145718	A7SH79	A7T4M1	Predicted protein.	Predicted protein.	0.468
v1g118178	v1g146211	A7SH79	A7T515	Predicted protein.	Predicted protein.	0.904
v1g118178	v1g147404	A7SH79	A7T629	Predicted protein.	Predicted protein.	0.715
v1g118178	v1g169387	A7SH79	A7SDS0	Predicted protein.	Predicted protein.	0.406
v1g118178	v1g169525	A7SH79	A7SE43	Predicted protein.	Predicted protein.	0.468
v1g118178	v1g178700	A7SH79	A7RJC0	Predicted protein.	Predicted protein.	0.930
v1g118178	v1g197956	A7SH79	A7RJB7	Predicted protein.	Predicted protein.	0.930
v1g118178	v1g217267	A7SH79	A7STJ2	Predicted protein.	Predicted protein.	0.930
v1g118178	v1g240343	A7SH79	A7RS80	Predicted protein.	Predicted protein.	0.705