(30 nodes) Peptidyl-threonine phosphorylation network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g130600	Predicted protein. (506 aa)
	v1g237975	Predicted protein. (553 aa)
	v1g81131	Predicted protein; Belongs to the protein kinase superfamily. (355 aa)
	v1g84740	Predicted protein; Belongs to the protein kinase superfamily. (309 aa)
	v1g200667	Predicted protein. (551 aa)
	v1g20898	Predicted protein; Belongs to the protein kinase superfamily. (444 aa)
	v1g205033	Predicted protein. (503 aa)
	v1g166091	Predicted protein; Belongs to the protein kinase superfamily. (371 aa)
	v1g169881	Predicted protein; Belongs to the protein kinase superfamily. (411 aa)
	v1g115977	Predicted protein. (886 aa)
	v1g190252	Predicted protein; Belongs to the protein kinase superfamily. (418 aa)
	v1g120202	Predicted protein; Belongs to the protein kinase superfamily. (338 aa)
	v1g213633	Predicted protein. (539 aa)
	v1g245888	Predicted protein. (855 aa)
	v1g126386	Predicted protein; Belongs to the PI3/PI4-kinase family. (1860 aa)
	v1g126375	Predicted protein. (597 aa)
	v1g126379	Predicted protein. (1495 aa)
	v1g10896	Predicted protein; Belongs to the protein kinase superfamily. (278 aa)
	v1g134994	Predicted protein. (174 aa)
	v1g135000	Predicted protein. (77 aa)
	v1g135014	Predicted protein. (340 aa)
	v1g46765	Predicted protein. (87 aa)
	v1g220346	Predicted protein. (162 aa)
	v1g233772	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (428 aa)
	v1g144000	Predicted protein. (90 aa)
	v1g223290	Predicted protein. (288 aa)
	v1g148883	Predicted protein. (77 aa)
	v1g6605	Predicted protein. (135 aa)
	v1g154013	Predicted protein. (105 aa)
	v1g225374	Predicted protein. (114 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g10896	v1g115977	A7SW88	A7SF24	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.922
v1g10896	v1g135014	A7SW88	A7SW93	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.900
v1g10896	v1g6605	A7SW88	A7TAW8	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.899
v1g115977	v1g10896	A7SF24	A7SW88	Predicted protein.	Predicted protein; Belongs to the protein kinase superfamily.	0.922
v1g115977	v1g169881	A7SF24	A7SF23	Predicted protein.	Predicted protein; Belongs to the protein kinase superfamily.	0.899
v1g126375	v1g126386	A7SPT9	A7SPT8	Predicted protein.	Predicted protein; Belongs to the PI3/PI4-kinase family.	0.950
v1g126375	v1g205033	A7SPT9	A7S0T5	Predicted protein.	Predicted protein.	0.932
v1g126379	v1g126386	A7SPU0	A7SPT8	Predicted protein.	Predicted protein; Belongs to the PI3/PI4-kinase family.	0.948
v1g126386	v1g126375	A7SPT8	A7SPT9	Predicted protein; Belongs to the PI3/PI4-kinase family.	Predicted protein.	0.950
v1g126386	v1g126379	A7SPT8	A7SPU0	Predicted protein; Belongs to the PI3/PI4-kinase family.	Predicted protein.	0.948
v1g126386	v1g205033	A7SPT8	A7S0T5	Predicted protein; Belongs to the PI3/PI4-kinase family.	Predicted protein.	0.833
v1g134994	v1g135014	A7SW91	A7SW93	Predicted protein.	Predicted protein.	0.722
v1g135014	v1g10896	A7SW93	A7SW88	Predicted protein.	Predicted protein; Belongs to the protein kinase superfamily.	0.900
v1g135014	v1g134994	A7SW93	A7SW91	Predicted protein.	Predicted protein.	0.722
v1g135014	v1g169881	A7SW93	A7SF23	Predicted protein.	Predicted protein; Belongs to the protein kinase superfamily.	0.884
v1g154013	v1g166091	A7TBT4	A7S3V6	Predicted protein.	Predicted protein; Belongs to the protein kinase superfamily.	0.543
v1g166091	v1g154013	A7S3V6	A7TBT4	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.543
v1g169881	v1g115977	A7SF23	A7SF24	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.899
v1g169881	v1g135014	A7SF23	A7SW93	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.884
v1g169881	v1g6605	A7SF23	A7TAW8	Predicted protein; Belongs to the protein kinase superfamily.	Predicted protein.	0.920