(18 nodes) Translesion synthesis network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g102068	Predicted protein. (265 aa)
	v1g102086	DNA polymerase. (497 aa)
	v1g101604	Predicted protein. (345 aa)
	v1g30213	Predicted protein. (870 aa)
	v1g81622	Predicted protein. (163 aa)
	v1g96181	Predicted protein. (324 aa)
	v1g183924	Predicted protein. (270 aa)
	v1g148076	Predicted protein. (224 aa)
	v1g2423	Predicted protein. (175 aa)
	v1g231426	Predicted protein. (501 aa)
	v1g243507	Predicted protein. (363 aa)
	v1g21291	Predicted protein. (483 aa)
	v1g223652	Predicted protein. (276 aa)
	v1g175505	Predicted protein. (329 aa)
	v1g218204	Predicted protein. (489 aa)
	v1g112412	Predicted protein. (403 aa)
	v1g225793	Predicted protein. (340 aa)
	v1g108175	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (523 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g101604	v1g102068	A7S226	A7S2K2	Predicted protein.	Predicted protein.	0.936
v1g101604	v1g102086	A7S226	A7S2J9	Predicted protein.	DNA polymerase.	0.936
v1g101604	v1g108175	A7S226	A7S7Y2	Predicted protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.610
v1g101604	v1g112412	A7S226	A7SBP1	Predicted protein.	Predicted protein.	0.685
v1g101604	v1g148076	A7S226	A7T6P5	Predicted protein.	Predicted protein.	0.597
v1g101604	v1g183924	A7S226	A7RZX6	Predicted protein.	Predicted protein.	0.699
v1g101604	v1g21291	A7S226	A7SB19	Predicted protein.	Predicted protein.	0.635
v1g101604	v1g218204	A7S226	A7SVP8	Predicted protein.	Predicted protein.	0.744
v1g101604	v1g225793	A7S226	A8DVS3	Predicted protein.	Predicted protein.	0.525
v1g101604	v1g231426	A7S226	A7T4A2	Predicted protein.	Predicted protein.	0.635
v1g101604	v1g30213	A7S226	A7REV5	Predicted protein.	Predicted protein.	0.991
v1g102068	v1g101604	A7S2K2	A7S226	Predicted protein.	Predicted protein.	0.936
v1g102068	v1g102086	A7S2K2	A7S2J9	Predicted protein.	DNA polymerase.	0.964
v1g102068	v1g108175	A7S2K2	A7S7Y2	Predicted protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.922
v1g102068	v1g112412	A7S2K2	A7SBP1	Predicted protein.	Predicted protein.	0.864
v1g102068	v1g148076	A7S2K2	A7T6P5	Predicted protein.	Predicted protein.	0.648
v1g102068	v1g183924	A7S2K2	A7RZX6	Predicted protein.	Predicted protein.	0.428
v1g102068	v1g21291	A7S2K2	A7SB19	Predicted protein.	Predicted protein.	0.751
v1g102068	v1g218204	A7S2K2	A7SVP8	Predicted protein.	Predicted protein.	0.978
v1g102068	v1g225793	A7S2K2	A8DVS3	Predicted protein.	Predicted protein.	0.648