(36 nodes) Lamellipodium network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g9326	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily. (68 aa)
	v1g237819	Predicted protein. (579 aa)
	v1g238216	Predicted protein. (584 aa)
	v1g81393	Predicted protein. (320 aa)
	v1g81245	Predicted protein. (131 aa)
	v1g160746	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily. (428 aa)
	v1g87356	Predicted protein. (163 aa)
	v1g163204	Predicted protein. (214 aa)
	v1g164111	Predicted protein. (313 aa)
	v1g36978	Predicted protein. (156 aa)
	v1g242616	Predicted protein. (1332 aa)
	v1g104827	Predicted protein. (128 aa)
	v1g207272	Predicted protein. (315 aa)
	v1g114126	Predicted protein. (296 aa)
	v1g114137	Predicted protein. (93 aa)
	v1g188586	Predicted protein. (101 aa)
	v1g19347	Predicted protein. (106 aa)
	v1g189130	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily. (427 aa)
	v1g211309	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily. (457 aa)
	v1g211491	Predicted protein. (328 aa)
	v1g245940	Predicted protein. (1067 aa)
	v1g216270	Predicted protein. (203 aa)
	v1g128880	Predicted protein. (159 aa)
	v1g129274	Predicted protein. (191 aa)
	v1g216883	Predicted protein. (370 aa)
	v1g16598	Predicted protein. (161 aa)
	v1g174799	Predicted protein. (439 aa)
	v1g134716	Predicted protein. (391 aa)
	v1g137751	Predicted protein. (245 aa)
	v1g220336	Predicted protein. (119 aa)
	v1g220916	Predicted protein. (125 aa)
	v1g148601	Predicted protein. (154 aa)
	v1g148795	Predicted protein. (168 aa)
	v1g223980	Predicted protein. (113 aa)
	v1g224666	Predicted protein. (450 aa)
	v1g154689	Predicted protein. (73 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g104827	v1g129274	A7S4T4	A7SRY9	Predicted protein.	Predicted protein.	0.588
v1g128880	v1g211491	A7SRI3	A7SFI7	Predicted protein.	Predicted protein.	0.907
v1g129274	v1g104827	A7SRY9	A7S4T4	Predicted protein.	Predicted protein.	0.588
v1g129274	v1g148795	A7SRY9	A7T7E6	Predicted protein.	Predicted protein.	0.919
v1g129274	v1g16598	A7SRY9	A7ST28	Predicted protein.	Predicted protein.	0.919
v1g129274	v1g188586	A7SRY9	A7SDP5	Predicted protein.	Predicted protein.	0.919
v1g129274	v1g19347	A7SRY9	A7SDP6	Predicted protein.	Predicted protein.	0.919
v1g129274	v1g242616	A7SRY9	A7S3J0	Predicted protein.	Predicted protein.	0.995
v1g148601	v1g220336	A7T767	A7T096	Predicted protein.	Predicted protein.	0.415
v1g148601	v1g220916	A7T767	A7T1G8	Predicted protein.	Predicted protein.	0.453
v1g148601	v1g245940	A7T767	A7SKW6	Predicted protein.	Predicted protein.	0.657
v1g148795	v1g129274	A7T7E6	A7SRY9	Predicted protein.	Predicted protein.	0.919
v1g148795	v1g242616	A7T7E6	A7S3J0	Predicted protein.	Predicted protein.	0.862
v1g154689	v1g36978	A7TCD0	A7RYJ6	Predicted protein.	Predicted protein.	0.438
v1g160746	v1g189130	A7RMZ4	A7SF43	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily.	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.556
v1g160746	v1g211309	A7RMZ4	A7SF44	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily.	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.540
v1g160746	v1g9326	A7RMZ4	A7TD74	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily.	Predicted protein; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.554
v1g16598	v1g129274	A7ST28	A7SRY9	Predicted protein.	Predicted protein.	0.919
v1g16598	v1g242616	A7ST28	A7S3J0	Predicted protein.	Predicted protein.	0.862
v1g188586	v1g129274	A7SDP5	A7SRY9	Predicted protein.	Predicted protein.	0.919