(39 nodes) Clathrin-coated vesicle membrane network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g102295	Predicted protein. (617 aa)
	v1g102466	Predicted protein. (192 aa)
	v1g236331	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (943 aa)
	v1g82777	Predicted protein. (178 aa)
	v1g70295	Predicted protein. (299 aa)
	v1g42204	Predicted protein. (237 aa)
	v1g199950	Receptor expression-enhancing protein. (227 aa)
	v1g92529	Predicted protein. (259 aa)
	v1g93404	Predicted protein. (312 aa)
	v1g94236	Predicted protein. (355 aa)
	v1g163153	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1677 aa)
	v1g95485	Predicted protein. (259 aa)
	v1g95497	Predicted protein. (188 aa)
	v1g241115	Predicted protein. (1408 aa)
	v1g164250	Predicted protein. (571 aa)
	v1g101531	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	v1g175828	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (198 aa)
	v1g231023	Receptor expression-enhancing protein. (188 aa)
	v1g134675	Predicted protein. (378 aa)
	v1g132142	Predicted protein. (232 aa)
	v1g131866	Predicted protein. (191 aa)
	v1g131251	Predicted protein. (237 aa)
	v1g214854	Predicted protein. (459 aa)
	v1g190491	AP complex subunit beta. (882 aa)
	v1g171064	Predicted protein. (270 aa)
	v1g118171	Predicted protein. (156 aa)
	v1g235477	Predicted protein. (233 aa)
	v1g109837	Predicted protein. (146 aa)
	v1g105514	Predicted protein. (70 aa)
	v1g102934	Predicted protein; Belongs to the adaptor complexes medium subunit family. (429 aa)
	v1g153519	Predicted protein. (276 aa)
	v1g152780	Predicted protein. (134 aa)
	v1g4107	Predicted protein. (236 aa)
	v1g151236	Predicted protein. (155 aa)
	v1g149826	Predicted protein. (86 aa)
	v1g148744	Predicted protein. (296 aa)
	v1g145560	Predicted protein. (93 aa)
	v1g5735	Predicted protein. (83 aa)
	v1g220526	Predicted protein. (267 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g101531	v1g102295	A7S269	A7S2T7	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein.	0.816
v1g101531	v1g102466	A7S269	A7S2T6	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein.	0.724
v1g101531	v1g102934	A7S269	A7S370	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein; Belongs to the adaptor complexes medium subunit family.	0.999
v1g101531	v1g118171	A7S269	A7SH59	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein.	0.747
v1g101531	v1g163153	A7S269	A7RVC0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.915
v1g101531	v1g164250	A7S269	A7RYM9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein.	0.838
v1g101531	v1g171064	A7S269	A7SIZ0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein.	0.925
v1g101531	v1g175828	A7S269	A7SZR4	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.907
v1g101531	v1g190491	A7S269	A7SJK8	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit beta.	0.994
v1g101531	v1g235477	A7S269	A7SH58	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein.	0.622
v1g101531	v1g236331	A7S269	A7RH33	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.998
v1g101531	v1g241115	A7S269	A7RW68	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein.	0.774
v1g102295	v1g101531	A7S2T7	A7S269	Predicted protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.816
v1g102295	v1g102466	A7S2T7	A7S2T6	Predicted protein.	Predicted protein.	0.811
v1g102295	v1g102934	A7S2T7	A7S370	Predicted protein.	Predicted protein; Belongs to the adaptor complexes medium subunit family.	0.884
v1g102295	v1g118171	A7S2T7	A7SH59	Predicted protein.	Predicted protein.	0.679
v1g102295	v1g132142	A7S2T7	A7SUC1	Predicted protein.	Predicted protein.	0.629
v1g102295	v1g134675	A7S2T7	A7SW11	Predicted protein.	Predicted protein.	0.629
v1g102295	v1g145560	A7S2T7	A7T4G3	Predicted protein.	Predicted protein.	0.629
v1g102295	v1g163153	A7S2T7	A7RVC0	Predicted protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.966