(8 nodes) Phagocytic vesicle membrane network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g191733	Predicted protein. (206 aa)
	v1g209672	Predicted protein; Belongs to the synaptobrevin family. (223 aa)
	v1g243307	Predicted protein. (209 aa)
	v1g183227	Predicted protein; Belongs to the synaptobrevin family. (218 aa)
	v1g81517	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (214 aa)
	v1g57985	Predicted protein. (117 aa)
	v1g181611	Predicted protein. (205 aa)
	v1g174916	Predicted protein. (681 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g174916	v1g81517	A7SW33	A7RHB1	Predicted protein.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.900
v1g183227	v1g209672	A7RXX6	A7SBE8	Predicted protein; Belongs to the synaptobrevin family.	Predicted protein; Belongs to the synaptobrevin family.	0.904
v1g191733	v1g243307	A7SNL1	A7S718	Predicted protein.	Predicted protein.	0.526
v1g209672	v1g183227	A7SBE8	A7RXX6	Predicted protein; Belongs to the synaptobrevin family.	Predicted protein; Belongs to the synaptobrevin family.	0.904
v1g243307	v1g191733	A7S718	A7SNL1	Predicted protein.	Predicted protein.	0.526
v1g81517	v1g174916	A7RHB1	A7SW33	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	Predicted protein.	0.900