(30 nodes) Regulated exocytosis network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g220528	Predicted protein. (223 aa)
	v1g141652	Predicted protein. (500 aa)
	v1g146041	Predicted protein. (105 aa)
	v1g152665	Predicted protein. (56 aa)
	v1g98151	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family. (534 aa)
	v1g183590	Predicted protein. (446 aa)
	v1g229104	Predicted protein. (188 aa)
	v1g99855	Predicted protein. (114 aa)
	v1g99757	Predicted protein. (164 aa)
	v1g102868	Predicted protein. (303 aa)
	v1g108962	Predicted protein. (218 aa)
	v1g209672	Predicted protein; Belongs to the synaptobrevin family. (223 aa)
	v1g235418	Predicted protein; Belongs to the syntaxin family. (298 aa)
	v1g124102	Predicted protein. (80 aa)
	v1g215046	Predicted protein. (123 aa)
	v1g134873	Predicted protein. (666 aa)
	v1g136185	Predicted protein. (357 aa)
	v1g80485	Predicted protein. (387 aa)
	v1g238109	Predicted protein. (183 aa)
	v1g198562	Predicted protein. (390 aa)
	v1g85661	Predicted protein. (303 aa)
	v1g239013	Predicted protein. (543 aa)
	v1g162421	Predicted protein. (1174 aa)
	v1g203240	Predicted protein. (380 aa)
	v1g97230	Predicted protein. (135 aa)
	v1g183227	Predicted protein; Belongs to the synaptobrevin family. (218 aa)
	v1g247877	Predicted protein. (358 aa)
	v1g97106	Predicted protein. (273 aa)
	v1g98056	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family. (545 aa)
	v1g136599	Predicted protein. (143 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g108962	v1g134873	A7S8P1	A7SW72	Predicted protein.	Predicted protein.	0.443
v1g108962	v1g141652	A7S8P1	A7T1D8	Predicted protein.	Predicted protein.	0.443
v1g108962	v1g152665	A7S8P1	A7TAR1	Predicted protein.	Predicted protein.	0.672
v1g108962	v1g183227	A7S8P1	A7RXX6	Predicted protein.	Predicted protein; Belongs to the synaptobrevin family.	0.965
v1g108962	v1g209672	A7S8P1	A7SBE8	Predicted protein.	Predicted protein; Belongs to the synaptobrevin family.	0.986
v1g108962	v1g215046	A7S8P1	A7SNP8	Predicted protein.	Predicted protein.	0.446
v1g108962	v1g220528	A7S8P1	A7T0N7	Predicted protein.	Predicted protein.	0.752
v1g108962	v1g229104	A7S8P1	A7S070	Predicted protein.	Predicted protein.	0.672
v1g108962	v1g235418	A7S8P1	A7SG06	Predicted protein.	Predicted protein; Belongs to the syntaxin family.	0.966
v1g108962	v1g80485	A7S8P1	A7RGF3	Predicted protein.	Predicted protein.	0.826
v1g108962	v1g98056	A7S8P1	A7RYS1	Predicted protein.	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family.	0.728
v1g108962	v1g98151	A7S8P1	A7RYS2	Predicted protein.	Predicted protein; Belongs to the STXBP/unc-18/SEC1 family.	0.728
v1g108962	v1g99757	A7S8P1	A7S0C7	Predicted protein.	Predicted protein.	0.702
v1g108962	v1g99855	A7S8P1	A7S0C6	Predicted protein.	Predicted protein.	0.702
v1g134873	v1g108962	A7SW72	A7S8P1	Predicted protein.	Predicted protein.	0.443
v1g134873	v1g136185	A7SW72	A7SX17	Predicted protein.	Predicted protein.	0.819
v1g134873	v1g136599	A7SW72	A7SXD3	Predicted protein.	Predicted protein.	0.546
v1g134873	v1g141652	A7SW72	A7T1D8	Predicted protein.	Predicted protein.	0.943
v1g134873	v1g152665	A7SW72	A7TAR1	Predicted protein.	Predicted protein.	0.625
v1g134873	v1g162421	A7SW72	A7RT87	Predicted protein.	Predicted protein.	0.562