(10 nodes) Positive regulation of exocytosis network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g162421	Predicted protein. (1174 aa)
	v1g242473	Predicted protein. (815 aa)
	v1g244032	Predicted protein. (431 aa)
	v1g245819	Predicted protein; Belongs to the AAA ATPase family. (442 aa)
	v1g214573	Predicted protein. (413 aa)
	v1g246794	Predicted protein. (428 aa)
	v1g148251	Predicted protein. (184 aa)
	v1g137340	Predicted protein; Belongs to the AAA ATPase family. (284 aa)
	v1g227824	Predicted protein. (227 aa)
	v1g196107	Predicted protein. (134 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g137340	v1g244032	A7SXZ8	A7SAT5	Predicted protein; Belongs to the AAA ATPase family.	Predicted protein.	0.677
v1g137340	v1g245819	A7SXZ8	A7SK75	Predicted protein; Belongs to the AAA ATPase family.	Predicted protein; Belongs to the AAA ATPase family.	0.903
v1g244032	v1g137340	A7SAT5	A7SXZ8	Predicted protein.	Predicted protein; Belongs to the AAA ATPase family.	0.677
v1g244032	v1g245819	A7SAT5	A7SK75	Predicted protein.	Predicted protein; Belongs to the AAA ATPase family.	0.677
v1g245819	v1g137340	A7SK75	A7SXZ8	Predicted protein; Belongs to the AAA ATPase family.	Predicted protein; Belongs to the AAA ATPase family.	0.903
v1g245819	v1g244032	A7SK75	A7SAT5	Predicted protein; Belongs to the AAA ATPase family.	Predicted protein.	0.677