(26 nodes) Defense response to virus network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g134097	Predicted protein. (179 aa)
	v1g157776	Predicted protein. (497 aa)
	v1g237807	Predicted protein. (1054 aa)
	v1g177328	Predicted protein. (454 aa)
	v1g238471	Predicted protein. (936 aa)
	v1g198845	Predicted protein. (323 aa)
	v1g87071	Predicted protein. (689 aa)
	v1g87644	Predicted protein. (292 aa)
	v1g203090	Predicted protein. (120 aa)
	v1g35757	Predicted protein. (233 aa)
	v1g95706	Predicted protein. (672 aa)
	v1g241602	Predicted protein. (395 aa)
	v1g99151	Predicted protein. (232 aa)
	v1g211311	Predicted protein. (162 aa)
	v1g190285	Predicted protein. (641 aa)
	v1g213327	Predicted protein. (168 aa)
	v1g21542	Predicted protein. (492 aa)
	v1g246030	Predicted protein. (619 aa)
	v1g215615	Predicted protein. (141 aa)
	v1g247781	Predicted protein. (424 aa)
	v1g218753	Predicted protein. (242 aa)
	v1g142543	Predicted protein. (73 aa)
	v1g154803	Predicted protein. (55 aa)
	v1g225503	Predicted protein. (134 aa)
	v1g78370	Predicted protein. (119 aa)
	v1g156990	Predicted protein. (404 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g198845	v1g87644	A7RLH3	A7RNF3	Predicted protein.	Predicted protein.	0.992
v1g203090	v1g87644	A7RWA1	A7RNF3	Predicted protein.	Predicted protein.	0.520
v1g211311	v1g87644	A7SF47	A7RNF3	Predicted protein.	Predicted protein.	0.570
v1g241602	v1g87644	A7RYP1	A7RNF3	Predicted protein.	Predicted protein.	0.570
v1g35757	v1g87644	A7RWA2	A7RNF3	Predicted protein.	Predicted protein.	0.520
v1g87071	v1g87644	A7RMY2	A7RNF3	Predicted protein.	Predicted protein.	0.520
v1g87644	v1g198845	A7RNF3	A7RLH3	Predicted protein.	Predicted protein.	0.992
v1g87644	v1g203090	A7RNF3	A7RWA1	Predicted protein.	Predicted protein.	0.520
v1g87644	v1g211311	A7RNF3	A7SF47	Predicted protein.	Predicted protein.	0.570
v1g87644	v1g241602	A7RNF3	A7RYP1	Predicted protein.	Predicted protein.	0.570
v1g87644	v1g35757	A7RNF3	A7RWA2	Predicted protein.	Predicted protein.	0.520
v1g87644	v1g87071	A7RNF3	A7RMY2	Predicted protein.	Predicted protein.	0.520
v1g87644	v1g95706	A7RNF3	A7RWA7	Predicted protein.	Predicted protein.	0.520
v1g95706	v1g87644	A7RWA7	A7RNF3	Predicted protein.	Predicted protein.	0.520