(24 nodes) Transcription preinitiation complex assembly network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g138459	Predicted protein. (108 aa)
	v1g247138	Predicted protein. (407 aa)
	v1g247202	Predicted protein. (315 aa)
	v1g217267	Predicted protein. (174 aa)
	v1g133899	Predicted protein. (130 aa)
	v1g61396	Predicted protein. (290 aa)
	v1g169387	Predicted protein. (146 aa)
	v1g114480	Predicted protein. (114 aa)
	v1g226087	Predicted protein. (126 aa)
	v1g225715	Predicted protein. (135 aa)
	v1g7672	Predicted protein. (121 aa)
	v1g147404	Predicted protein. (522 aa)
	v1g146211	Predicted protein. (57 aa)
	v1g139976	Predicted protein. (106 aa)
	v1g238533	Predicted protein. (810 aa)
	v1g83420	Predicted protein. (375 aa)
	v1g197956	Predicted protein. (193 aa)
	v1g178700	Predicted protein. (931 aa)
	v1g67237	Predicted protein. (101 aa)
	v1g240343	Predicted protein. (674 aa)
	v1g162513	Predicted protein. (662 aa)
	v1g241356	Predicted protein. (231 aa)
	v1g118178	Predicted protein. (310 aa)
	v1g246040	Predicted protein. (255 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g114480	v1g118178	A7SDS2	A7SH79	Predicted protein.	Predicted protein.	0.715
v1g114480	v1g147404	A7SDS2	A7T629	Predicted protein.	Predicted protein.	0.542
v1g114480	v1g169387	A7SDS2	A7SDS0	Predicted protein.	Predicted protein.	0.586
v1g114480	v1g240343	A7SDS2	A7RS80	Predicted protein.	Predicted protein.	0.634
v1g118178	v1g114480	A7SH79	A7SDS2	Predicted protein.	Predicted protein.	0.715
v1g118178	v1g133899	A7SH79	A7SVA3	Predicted protein.	Predicted protein.	0.855
v1g118178	v1g138459	A7SH79	A7SYY0	Predicted protein.	Predicted protein.	0.980
v1g118178	v1g139976	A7SH79	A7T062	Predicted protein.	Predicted protein.	0.904
v1g118178	v1g146211	A7SH79	A7T515	Predicted protein.	Predicted protein.	0.904
v1g118178	v1g147404	A7SH79	A7T629	Predicted protein.	Predicted protein.	0.715
v1g118178	v1g162513	A7SH79	A7RTJ4	Predicted protein.	Predicted protein.	0.927
v1g118178	v1g169387	A7SH79	A7SDS0	Predicted protein.	Predicted protein.	0.406
v1g118178	v1g178700	A7SH79	A7RJC0	Predicted protein.	Predicted protein.	0.930
v1g118178	v1g197956	A7SH79	A7RJB7	Predicted protein.	Predicted protein.	0.930
v1g118178	v1g217267	A7SH79	A7STJ2	Predicted protein.	Predicted protein.	0.930
v1g118178	v1g225715	A7SH79	A8DVI6	Predicted protein.	Predicted protein.	0.796
v1g118178	v1g240343	A7SH79	A7RS80	Predicted protein.	Predicted protein.	0.705
v1g118178	v1g241356	A7SH79	A7RXF9	Predicted protein.	Predicted protein.	0.666
v1g118178	v1g246040	A7SH79	A7SLJ3	Predicted protein.	Predicted protein.	0.924
v1g118178	v1g247202	A7SH79	A7SSV1	Predicted protein.	Predicted protein.	0.492