(68 nodes) Positive regulation of cell cycle process network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g93716	Predicted protein. (194 aa)
	v1g30881	Predicted protein. (778 aa)
	v1g204335	Predicted protein. (583 aa)
	v1g98908	Predicted protein. (247 aa)
	v1g100198	Predicted protein. (330 aa)
	v1g102735	Predicted protein. (119 aa)
	v1g105061	Predicted protein. (556 aa)
	v1g208115	Predicted protein. (238 aa)
	v1g237019	Predicted protein. (507 aa)
	v1g167848	Predicted protein. (136 aa)
	v1g109363	Predicted protein. (185 aa)
	v1g81219	Predicted protein. (871 aa)
	v1g80927	Predicted protein. (90 aa)
	v1g80394	Predicted protein. (76 aa)
	v1g80906	Predicted protein. (411 aa)
	v1g79669	Predicted protein. (206 aa)
	v1g235892	Predicted protein. (202 aa)
	v1g246749	Predicted protein. (232 aa)
	v1g246586	Predicted protein. (811 aa)
	v1g214788	Predicted protein. (1816 aa)
	v1g191273	Predicted protein; Belongs to the cullin family. (694 aa)
	v1g171734	Predicted protein; Belongs to the cullin family. (577 aa)
	v1g235548	Predicted protein. (89 aa)
	v1g119642	Predicted protein; Belongs to the cullin family. (122 aa)
	v1g237281	Predicted protein; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	v1g212050	Predicted protein. (612 aa)
	v1g116171	Predicted protein. (975 aa)
	v1g115977	Predicted protein. (886 aa)
	v1g169881	Predicted protein; Belongs to the protein kinase superfamily. (411 aa)
	v1g244659	Predicted protein. (2095 aa)
	v1g114199	Predicted protein. (294 aa)
	v1g179224	Predicted protein. (487 aa)
	v1g84846	Predicted protein. (1320 aa)
	v1g178656	Predicted protein. (252 aa)
	v1g238634	Predicted protein. (1429 aa)
	v1g82785	Predicted protein. (92 aa)
	v1g239674	Predicted protein. (763 aa)
	v1g90580	Predicted protein; Belongs to the cullin family. (256 aa)
	v1g201065	Predicted protein. (386 aa)
	v1g181564	Predicted protein. (553 aa)
	v1g93093	Predicted protein. (296 aa)
	v1g241129	Predicted protein. (861 aa)
	v1g243751	Predicted protein. (1366 aa)
	v1g111040	Predicted protein. (1128 aa)
	v1g112998	Predicted protein. (114 aa)
	v1g210037	Predicted protein. (139 aa)
	v1g244257	Predicted protein. (679 aa)
	v1g113586	Predicted protein. (397 aa)
	v1g113856	Predicted protein. (540 aa)
	v1g11161	Predicted protein. (329 aa)
	v1g156451	Predicted protein. (101 aa)
	v1g225368	Predicted protein. (100 aa)
	v1g59717	Predicted protein. (72 aa)
	v1g149933	Predicted protein; Belongs to the cullin family. (122 aa)
	v1g149932	Predicted protein; Belongs to the cullin family. (70 aa)
	v1g223290	Predicted protein. (288 aa)
	v1g222801	Predicted protein. (300 aa)
	v1g248724	Predicted protein. (902 aa)
	v1g222302	Predicted protein. (475 aa)
	v1g222139	Predicted protein. (241 aa)
	v1g152	Predicted protein. (177 aa)
	v1g237657	Predicted protein; Belongs to the cyclin family. (287 aa)
	v1g220346	Predicted protein. (162 aa)
	v1g140123	Predicted protein. (149 aa)
	v1g220143	Predicted protein. (348 aa)
	v1g137233	Predicted protein. (157 aa)
	v1g218026	Predicted protein. (516 aa)
	v1g247133	Predicted protein. (519 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g102735	v1g156451	A7S2Z2	A8DVH1	Predicted protein.	Predicted protein.	0.528
v1g102735	v1g208115	A7S2Z2	A7S7T2	Predicted protein.	Predicted protein.	0.528
v1g102735	v1g80906	A7S2Z2	A7RGA8	Predicted protein.	Predicted protein.	0.596
v1g102735	v1g93716	A7S2Z2	A7RUB0	Predicted protein.	Predicted protein.	0.406
v1g105061	v1g140123	A7S518	A7T098	Predicted protein.	Predicted protein.	0.989
v1g105061	v1g181564	A7S518	A7RT01	Predicted protein.	Predicted protein.	0.995
v1g105061	v1g204335	A7S518	A7RZ67	Predicted protein.	Predicted protein.	0.989
v1g105061	v1g235548	A7S518	A7SJC0	Predicted protein.	Predicted protein.	0.961
v1g105061	v1g235892	A7S518	A7SSG0	Predicted protein.	Predicted protein.	0.964
v1g105061	v1g237281	A7S518	A7SI65	Predicted protein.	Predicted protein; Belongs to the ubiquitin-conjugating enzyme family.	0.901
v1g105061	v1g246586	A7S518	A7SPJ9	Predicted protein.	Predicted protein.	0.999
v1g105061	v1g30881	A7S518	A7RXJ9	Predicted protein.	Predicted protein.	0.998
v1g105061	v1g80906	A7S518	A7RGA8	Predicted protein.	Predicted protein.	0.605
v1g109363	v1g11161	A7S8Z1	A7SDJ9	Predicted protein.	Predicted protein.	0.870
v1g109363	v1g237657	A7S8Z1	A7T1H9	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.639
v1g109363	v1g30881	A7S8Z1	A7RXJ9	Predicted protein.	Predicted protein.	0.447
v1g109363	v1g80906	A7S8Z1	A7RGA8	Predicted protein.	Predicted protein.	0.553
v1g111040	v1g235892	A7SAK3	A7SSG0	Predicted protein.	Predicted protein.	0.472
v1g111040	v1g238634	A7SAK3	A7RIX4	Predicted protein.	Predicted protein.	0.594
v1g111040	v1g59717	A7SAK3	A7TCE4	Predicted protein.	Predicted protein.	0.547