(33 nodes) ATP-dependent chromatin remodeler activity network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g171328	Predicted protein. (756 aa)
	v1g114817	Predicted protein. (221 aa)
	v1g169525	Predicted protein. (1872 aa)
	v1g209299	Predicted protein. (836 aa)
	v1g226879	Predicted protein. (1022 aa)
	v1g208858	Predicted protein. (334 aa)
	v1g229706	Predicted protein. (824 aa)
	v1g25276	Predicted protein. (203 aa)
	v1g223552	Predicted protein. (607 aa)
	v1g59717	Predicted protein. (72 aa)
	v1g110916	Predicted protein. (560 aa)
	v1g8814	Predicted protein. (152 aa)
	v1g243958	Predicted protein. (152 aa)
	v1g133031	Predicted protein. (659 aa)
	v1g135257	Predicted protein. (863 aa)
	v1g248358	Predicted protein. (708 aa)
	v1g145718	Predicted protein. (232 aa)
	v1g145813	Predicted protein. (223 aa)
	v1g222964	Predicted protein. (228 aa)
	v1g213296	Predicted protein. (177 aa)
	v1g161221	Predicted protein. (911 aa)
	v1g30104	Predicted protein. (1360 aa)
	v1g85376	Predicted protein. (130 aa)
	v1g90246	Predicted protein. (614 aa)
	v1g111040	Predicted protein. (1128 aa)
	v1g238634	Predicted protein. (1429 aa)
	v1g81314	Predicted protein. (236 aa)
	v1g80671	Predicted protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (532 aa)
	v1g162318	Predicted protein. (1438 aa)
	v1g201649	Predicted protein. (164 aa)
	v1g94894	Predicted protein. (814 aa)
	v1g241026	Predicted protein. (1527 aa)
	v1g105359	Predicted protein. (627 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g105359	v1g145718	A7S5B2	A7T4M1	Predicted protein.	Predicted protein.	0.904
v1g105359	v1g25276	A7S5B2	A7S9J5	Predicted protein.	Predicted protein.	0.910
v1g110916	v1g145718	A7SAF5	A7T4M1	Predicted protein.	Predicted protein.	0.914
v1g110916	v1g145813	A7SAF5	A7T4Q4	Predicted protein.	Predicted protein.	0.400
v1g110916	v1g161221	A7SAF5	A7RPD7	Predicted protein.	Predicted protein.	0.478
v1g110916	v1g25276	A7SAF5	A7S9J5	Predicted protein.	Predicted protein.	0.564
v1g111040	v1g135257	A7SAK3	A7SWF7	Predicted protein.	Predicted protein.	0.402
v1g111040	v1g238634	A7SAK3	A7RIX4	Predicted protein.	Predicted protein.	0.594
v1g111040	v1g59717	A7SAK3	A7TCE4	Predicted protein.	Predicted protein.	0.547
v1g114817	v1g145718	A7SE45	A7T4M1	Predicted protein.	Predicted protein.	0.900
v1g114817	v1g85376	A7SE45	A7RL20	Predicted protein.	Predicted protein.	0.583
v1g133031	v1g145718	A7SUV1	A7T4M1	Predicted protein.	Predicted protein.	0.462
v1g133031	v1g85376	A7SUV1	A7RL20	Predicted protein.	Predicted protein.	0.534
v1g135257	v1g111040	A7SWF7	A7SAK3	Predicted protein.	Predicted protein.	0.402
v1g135257	v1g145718	A7SWF7	A7T4M1	Predicted protein.	Predicted protein.	0.895
v1g135257	v1g25276	A7SWF7	A7S9J5	Predicted protein.	Predicted protein.	0.902
v1g135257	v1g81314	A7SWF7	A7RH53	Predicted protein.	Predicted protein.	0.578
v1g145718	v1g105359	A7T4M1	A7S5B2	Predicted protein.	Predicted protein.	0.904
v1g145718	v1g110916	A7T4M1	A7SAF5	Predicted protein.	Predicted protein.	0.914
v1g145718	v1g114817	A7T4M1	A7SE45	Predicted protein.	Predicted protein.	0.900